NONHSAT094548

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT094548

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1503 nt

Genomic location

chr4-:419604..467840

Exon number

3

Exons

419604..420908,466364..466490,467770..467840

Genome context

Sequence
000001 TCGCTCTGTA ACCTGCGGGT ATTGGATGAT TCGTAGCTAA GACTTCGCGA CACCCTTGAA GCTGAGAAAT GGAACCCTTA 000080
000081 ACATTCAGGG ATGTGGCCAT AGAATTCTCT CCAGAAGAGT GGAAATGCCT GGACCCTGCC CAGCAGAATT TGTATAGAGA 000160
000161 TGTGATGTTG GAGAACTACA GAAACCTGGT CTCCCTAGGA TATGTCGTTA TTGATCCAGC TCAACTTTAT GTATATGAGA 000240
000241 AACTTGGACA GTCTGGACAA TAGAATAAAT GAAGTCAATA AAACCATTCT TTTAACAAAC TTAATACCAT ACCTTCAGAG 000320
000321 TGTTATTTTC CTTTTTGTCA TAAGGTGTCT GGAAATGAAG TATGGAAATG AAATCATGAA TAAAGACCCA GTTTTCAGAA 000400
000401 TCTCTCCACG AAGTAGAGGA ACTCATACCA ATCCAGAAGA GCCTGAAGAA GATGTTCAAG CTGAAAGAGT CCAAGCAGCA 000480
000481 AATGCACTCA CTACTCCAAA CTTGGAGGAG GAACCAGTCA TAACTGCAAG CTGTTTACAC AAGGAATATT ATGAGACAAA 000560
000561 GAAAGTTGCT TTTCAACAAC AAAGAAGAAA GCAGCCATCA GAAATGTTTC GTTTTGTGTT AAAAAGTGAA GTTTTGGGAT 000640
000641 TACTAGGACA CAATGGAGCT GGCAAAAGTA CTTCCATTAA AATGATAACT GGGTGCACAG TGCCAACTGC AGGAGTGGTG 000720
000721 GTGTTACAAG GCAACAGAGC ATCAGTAAGG CAACAGCGTG ACAACAGCCT CAAGTTCTTG GGTACTGCCC TCAGGAGAAC 000800
000801 TCACTGTGTC CCAAACTTAC AATGAAAGAG CATTTGGAGT TGTATGCAGC CGTGAAAGGA CTGGGCAAAG ATGCTGCTCT 000880
000881 TAGTATTTCA TGATTGGTGG AAGCTCTCAA GCTCCAGGAG CAACTTAAGG CTCCCGTGAA AACTCTATCA GAGGGAATAA 000960
000961 AGAGAAAGCT ATGCTTCGTG CTGAGCATAC TGGGGAACCC ATCAGTGGTG CTTCTAGACG AGCTGTTCAC CGGGATGGAC 001040
001041 CCTGAGGGGC AGCAGCAAAT GTGGCAGATA CTTCAGGCTA CCATTAAAAA CCAGGAGAGG GGCGCCCTCT TGACCACCCA 001120
001121 TTACATGTCA GAGGCTAAGT CTCTGTGTGA CCGTGTGGCC ATCATGGTGT CAGGAACGCT AAGGTGTATT GGTTCCATTC 001200
001201 AACAGCTGAA AAGTTTGGTA AAGATTATTT ACTAGAAATA AAAATGAAAG AACCTACTCA GGTGGAAGCT CTCCACACAG 001280
001281 AGATTTTGAA GCTTTTCCCA CAGGCTGCTT GGCAGGAAAG ATATTCCTCT TTAATGGCAT GTAAGTTACC TGTGGAGGAT 001360
001361 GTCCACCCTC TGTCTCAGGC CTTTTTCAAA TTAAAGGCAG TGAAACAGAC CTTCAACCTG GAGGAATACA GCCTCTCTCA 001440
001441 GGCTACCTTG GAGCAGGTGT TCTTAGAACT CTGTAAAGAG CAGGCGCTGG GAAATGTTGA TGA
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Predicted Small Protein

Name NONHSAT094548_smProtein_1034:1234
Length 67
Molecular weight 7467.7135
Aromaticity 0.0454545454545
Instability index 50.3
Isoelectric point 8.73797607422
Runs 11
Runs residual 0.0160587915079
Runs probability 0.0387660387661
Amino acid sequence MDPEGQQQMWQILQATIKNQERGALLTTHYMSEAKSLCDRVAIMVSGTLRCIGSIQQLKS
LVKIIY
Secondary structure LLHHHHHHHHHHHHHHHHHHHLLLLLHHHHHHHHHHHLLLEEEEELLLHHHHLHHHHHHH
HHHHHL
PRMN -
PiMo -