ENST00000562493.1
Revision as of 17:49, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000562493.1 |
Source |
Gencode19 |
Same with |
lnc-UQCRFS1-8:1 |
Classification |
intergenic |
Length |
3666 nt |
Genomic location |
chr19-:28248092..28251757 |
Exon number |
1 |
Exons |
28248092..28251757 |
Genome context |
|
Sequence |
000001 CACTACCCAT GGACCCCAGG CAGTCTAATT ATAGAGACAA TTGAATGACA CCACACATTC TAATGGAAGA CACTTCCGGA 000080
000081 TGACCCAGAC ATCCTAATGA TAGAGACACT TGTGCAACCC CAGCCAGCCT AATGATAGAA ACACCTGGGC GACTTTAGGC 000160 000161 ATTCTTACGG GAGAGACCTC CAGCTGACCC CAGTAATTCT GATGATAGAG ACCCCTGGTT GACCCCTGTC ATTCTGATGG 000240 000241 GAGAAACTCC TGGCTGACAA AATGTAGTCT AATGGTAGAA ACATCTTGGC GACCCCAGGC ATTCTAATGG GAGAGACTCC 000320 000321 TGACAAAACT TTGGCATTCT AATGATAAAG ACAAGTGGGC AACCCCAAGC ATTGTAATGG TAAAGACACC TGGGTGATCC 000400 000401 CAGGAATTCT AATGTGAGAG ACTCCTGGCC AACCCCAGGC ATTCTAATAA AGAGACTTCT GTCTGACCAC AGGCTGTCTA 000480 000481 GTGATAGAGA TACCAGGGTT ACTCCAGGCA TTCTAATGAA AGAGACTCCT GGCGGACCCC AGACAGTCTA TTTAAAGTGA 000560 000561 TAACCTGGGC CACCACAGGC ACTCTAATGG AAGAGACTCC TGGCTGACCC CAGGCATTCT AATGGGAGAG AATCCTGGCC 000640 000641 GAACCCAGGC AGCCAATGGA TAGAGACACC TGAGCAAACC CAGGCATTCT AATGAAAGAG ACTCCCGGCC GACCCCAGGC 000720 000721 AGTCTAATAA TAGAGACACG TGAGTGGACA CAGGCATTCT AATAGGAGAG ATTCCTGGCT GACCCAAGCA GTCTAATTAT 000800 000801 AGACACCTGG GTGACTCCAG GCTTTCTAAT AGGAGAAACC CCAGGCTGAC CCTAAGCAGT CTGATGATAG AGGCTTCTTG 000880 000881 GTGACGGCAA GCATTCTAAT GTGAGAGACT CTCGGCCAAC CCCAGGCATT CTAATGATAG AGACATTTGG GAGCCCCCAG 000960 000961 TTATTTTAAT GATAGAGACA CCTGAGCGAC CCTAAGCATT CTAATGGGAG ACAACAAGGC TGAAACCAGG CTTTCTAATG 001040 001041 GGGAGACACC TGGCTGATCC CCAACAGTCT AATCATAAAA AACACCTGGA TGACTCCAGT CATTTTAATG GCAGAGACTC 001120 001121 CCGGTCTACC CCAGGTGTTT TAATGGGGAG ACTTCTGACC GACCCCAGGC AGTCTAATCA TAAAGACAGC TGGGCTAAGC 001200 001201 CAGACAGTCT AATGAAAGAG ATTGCCAGCC GAACACTGGC TGTTTAATTA TAAAGACACT TGGGCAATCC CAGGCGTTCC 001280 001281 AATGGAGGAG ACTCCCAGCT GACCACAAGC AGTCTAATGG TATTGACACC TGGAAGTCCC AAGACATTCT AATGGAAGAG 001360 001361 ATTCCCGTCC TACCACAGGC ATTCTAATGA TAGAGATACC TGGGCCACCC CAGGCATTCT AATGGGAGAG ACTCCTGGCT 001440 001441 GACAACAGAC AGTCTAATGA TAGAGAAACT TGGGCGAACC CAGTATTCTG ATTGGAGAGA TTCTAGGCAG TCTGATAGTG 001520 001521 ACAACTGGGC AACTACAGGC ATTCTAATGG GAGAGGCTAA TGGCTGACCA CAGGCATTTT AATTGGAGAG AATCCTGACT 001600 001601 GACCCAAGGA AATTTAAGGA TAGAGACACC CGGGTGATCC CAGACATTCT AACGGGAGAG ACTCCTGACC GACACCAGAC 001680 001681 AGTCTAATTA CAGAGACACT TGGGCTATCC CAGGCATTCT ACTGAAAGTG ACTCCCGTTT GACTCCAGGC AGTCTAATGA 001760 001761 TAGAAATACC TGGTTGACTT CAGGCATTGT AATGGGAGAG ACCCCCATCC AATCCCAGGC AGTCTAATGA TAGAGACAGC 001840 001841 TGGGCGACCC CAGGCGTTCT AATAGAGTAT CGGCTAACCA CAGGCAGTCT AATGAGAGAG ACAACGTGGA GACCTGATTC 001920 001921 ATTCTAATCA AAGAGACTCC CAGCGAACCC CAGTCATTCT AGTAAAAGAG ACACTTGTCC GACTTCAGGC AGTCTAAGTA 002000 002001 TAGAGACTGC GGGGCAACCC CACACATTCT AATGGGAGAG AGTCTGGGCC AAACCCAGGC AGTCTAATTA TAGGACACGT 002080 002081 GAGCGACCAA ACTCATTCTA ATGGGAGAAA CTCCTGGCGG GCCCCATGCC ACCTAATGAT AGAGACACTT GGACGACCCC 002160 002161 AGGCATTCTA ATGGGAAAGA TTCTTGGCCG ACCCCATGCT GCCTAATGAT AGAGACATCT GAGTGAACCC AGGCATTCTA 002240 002241 ATGAGAGATG CTCCTTGCCT ATTCCAGGCA TTCTAATGAC AGAGACACCT GGGCAACCCC AGGCATTGTA ATGATACAGA 002320 002321 CATGTGGGCG ATTTCAGGCA TTCTAATGAA AGAGACTCCC TGCGGACCCA GGCATTCTAA TGAGAGAGAC TCTCAGCCGA 002400 002401 TCTCAGGCAG TCTAATGATA GAGACACTGG AGTGACCAAA AGGATTTTAA TAAAAGAGAC TACCGGGCAA CCACAGGCAC 002480 002481 AGACAATCTA ATAATAGAGA CACCTGGGTG ACTTTAGACA TTTCAGTGGG AGAGACTCCC AGCCGGCCCC GAGCAATCTA 002560 002561 ATGATAGAGA CACCTGGGAA ACCTCATGTA TTCTAATGGG AGAAACTTTT GGCTGGCCCC AGACATTCTA ATGGGAGAGA 002640 002641 CTGCTGGCCG ACCCCAGGCA GTCTAATGAT AGAGACACCT TGGCCACCCC CGTATTCTAA AGGGAGAGAC TATTGACAGT 002720 002721 CCCCAGATTT TTTAATGATA CAGACACCTG CGTGAGCCTA AGCATTTTAA AAGGAGAGAC TCTTGGTGAC CACAGACATT 002800 002801 CTAATAATAG AGACACCTTG GCGATTCCAG TCATTCTAAT AGGAAAGACT CTCTTCTGAA CCCAGGCATT GTCTTGGGAG 002880 002881 ATAATCCTGG CTGAACCCAG ACAGTCTAAT TATAAAGACA CCTGGGCAAG CCTAGGCATT CTAATGGGAG ATACCTCCCC 002960 002961 AGTGTCCCCA GGCAGTCTAA TGATAGAGAC ACCTTGACGA CCACAGGCAT TATTATGAGA GACACACTTT GCCAAACTCA 003040 003041 GGCAGTCTAA TGCTAGAGAC AATTGGGCGA CAAGCATTCT AGCGGGAAAA ACTCCCGGCT GACCCCAGGC ATTGTAATAA 003120 003121 AAGAAAAGCC TGAGTGATCC CAGCCATTTT CATGGGAGAG ACACTTGTTC GACCCCAGGC ATTCTTATGG GAGGGACTAC 003200 003201 TGGCCAACAC CAGACAGTCT AATAAAAAAG ACATGTAGAT GACCCCATGC ATTCTTTTTT TTTCACACTT TAAATACTTT 003280 003281 ATTTATATAA AAACTCATTT GTTTTTAAAA GCATTAACAA GACAGAAAGA AAAGAGAAAA AGTATGGAGC AGAACACAAG 003360 003361 CCCGTTAGCA GTGTTCGGTG GGAAGGTGGG ATTTTTGGTT CTCTGGAATT GAATGTTTAG TGTTTTTATA AACAAAAGAG 003440 003441 GAAAAAAAAG TTAAAGGTCC CCAAAAGCCC ATGGCTATCC TATTACCCAT ACCCCACTGA GAAGGGAGGG GGCAGGGATA 003520 003521 GCATTAGGAG ATATACCTAA TGCTAAATGA CGAGTTAATG GGTGCAGCAC ACCAACATGG CACATGTATA CGTATGTAAC 003600 003601 AAACCTGCAC GTTGTGCACA TGTACCCTAA AACTTAAAGT ATAATAATAA TAAAATTAAA TATATA |
Predicted Small Protein
Name | ENST00000562493.1_smProtein_1037:1246 |
Length | 70 |
Molecular weight | 7761.5882 |
Aromaticity | 0.0289855072464 |
Instability index | 58.9507246377 |
Isoelectric point | 9.81072998047 |
Runs | 7 |
Runs residual | 0.0378820490745 |
Runs probability | 0.0464077522902 |
Amino acid sequence | MGRHLADPQQSNHKKHLDDSSHFNGRDSRSTPGVLMGRLLTDPRQSNHKDSWAKPDSLMK EIASRTLAV |
Secondary structure | LLLLLLLLLLLLHHHHLLLLLLLLLLLLLLLLLLEEEEELLLLLLLLLLLLLLLLHHHHH HHHHHHLLL |
PRMN | - |
PiMo | - |