ENST00000569932.1
Revision as of 18:05, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000569932.1 |
Source |
Gencode19 |
Same with |
lnc-ZNF639-1:1,NONHSAT093391 |
Classification |
intergenic |
Length |
1566 nt |
Genomic location |
chr3+:179058110..179059675 |
Exon number |
1 |
Exons |
179058110..179059675 |
Genome context |
|
Sequence |
000001 GCTGGAATTT GCTTTGTACT AGTGATTTGA AAAATAATTT TCTGGATAAC GAATTTCCAT ACTAAAGCAT CAGTCACCAC 000080
000081 CAATTCCTTA TTAAGTTAAT TCTCCTTAGT AACTTTGGTG TTAAAGTGGT AACTATCTGA ACCCAAAATA AATTTGTGAA 000160 000161 GAGTAATTTA TTCATTCTAA AAAGAAATTT TCTTACATTG CTAGAAAAGA ATAGTATCTA CTAATCTTAT TCCCATACTT 000240 000241 TATGAAGGGT GATTATTTAG AGAGTTTTAA AAGAAATTAA CAGAACATTT AAAAGTGTGT TCTTTGTTGT TTGTTTTTAA 000320 000321 ATAGGCAAAT GAATCTAACC TGACATCTTT TTTCCCCTTG CTAGAAATAT TGAGCTGAAT GAATTACATT CCAAAAATGT 000400 000401 AATGAATAGT ACACATTTTG AATGAAAACT CAAAGTTTTC TAGTTTTTAA TATCTTGTCT GGAGAGTGTA TCCACTACTT 000480 000481 GAAAAATACT GCAGTTGAAT TATTGATATT TTCACCTTTA CTCTTCAAAG TAAAGCTGAA ATCAGAAATT GGAATCATAT 000560 000561 TCAGCAAATG TAATTTCTGG TGGGTAATTT TCTTTTTTCT TTTTAAGGCT ATTCACCATG CTCTTCTGAA TTTTGGTTGG 000640 000641 CTAAAATTTG AGAATACAGA ATTCCCACGT TTCCTGCCTA CCCTGTTCAT TCTTGGTTAT GTCCAGAGTG GCATTATTTG 000720 000721 TCTTTTTCTG TTTTTCATTT TCTTTTATAA GAGAGGCCCA GGCAGATCTC AAACTCCTGG GCTCAAGTAA TCCACCTGCC 000800 000801 TCAGCCTCCC AAAGTGCTGG GATTACAGTC ATGAGCCACC ACTCCCGGCC TTATTCATCT TTTTTTAAAT ACATTATTTC 000880 000881 TGAAATTATA TTCTATGGCT GATTACTGTT ATCTTTACAA CTCATCTTAT TTGGGTTTTC AGAAAGTTTC AAAAGATTAA 000960 000961 AGTTTTCCCA ACTAACAAGG TAAGTTGCCA TGAACTAAAC ATGTCCCCCT CAAAATTCAT ATGTTCAAAT CCTAATCCCC 001040 001041 AGTGTGATGA TATCAGAAGA TGGGGCCTTT GGTATATGAT TAGGTCAGGA AAGTGGAGCC CTCATGAATG GGATTAGTGC 001120 001121 CGTTAGAAAA GGGATCCCAG AGAGCGCTCA CCTGTTTTCC ATGTGAGGAT ACAATGAGAA GTCAGCAGTC TGCAACCTGG 001200 001201 AAGAGAGCCT CACCAGAACC TAACCATACT GGCACCTTGA TCTCGGACTT CCAGCCTCCA GAACTGTGAG AAATTTCTGT 001280 001281 TGTTTATAAG CCACTCAGTC TATGGTACAT TGTTATAGTA GCCTATATTG ACTAAGATAG AGTAGATTTG TTTTGATTCT 001360 001361 TCCTTCCGTC TGTTCTCCAA ACTCTTAAAA TAAGTTACTC CCTTCATGCC ATATCCCACA TCACTTGCTT GTATACCGTG 001440 001441 TAAATATTTT ATATATACCT GCCTGGCATC AGTTTGTGCT GATTTTGTAA ATTTTGAATG TGTTTGTTTT AGATTTTAAG 001520 001521 CATAACATTA TGGCACATAT CTTAATAACT TTTTATGGTT ACAATA |
Predicted Small Protein
Name | ENST00000569932.1_smProtein_698:901 |
Length | 68 |
Molecular weight | 7491.5354 |
Aromaticity | 0.179104477612 |
Instability index | 54.1285074627 |
Isoelectric point | 9.03411865234 |
Runs | 9 |
Runs residual | 0.00898648120653 |
Runs probability | 0.039843765334 |
Amino acid sequence | MSRVALFVFFCFSFSFIREAQADLKLLGSSNPPASASQSAGITVMSHHSRPYSSFFKYII SEIIFYG |
Secondary structure | LLEEEEEEEEEELHHHHHHHHHHHHHHLLLLLLLLLLLLLLEEEEELLLLLLHHHHHHHH HHHHHLL |
PRMN | - |
PiMo | - |