NONHSAT092996
Revision as of 12:40, 13 October 2014 by 73.162.128.239 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT092996 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
4163 nt |
Genomic location |
chr3-:160212796..160217772 |
Exon number |
2 |
Exons |
160212796..160215639,160216454..160217772 |
Genome context |
|
Sequence |
000001 ACCATCAGTG CTTCAGTTTT CTCTCTATCC AAAGCAAGGT TTTAACTTTC CTTCATTCTC CAGTAAAACA GACCGAGACA 000080
000081 ACTTGAACTA TATTTTGAGT ATTGCTATAT CTTCAACATA TAGCTCCAAA TGATGGATTG TATACAAAGC ATAGTACAGA 000160 000161 AGGTTTCAGT AATTGGAAGG TGAACACAGC AATGCTTTAC ATAATTTGTG TTTTTTAGTA AAAAATATTG GATTCAAAGT 000240 000241 AAGCCAATGA GCTTGTATAC AAATTTTATA TACAAATTAT TGTATAGAAC AGTGATATGG AAAATAGGTA AGGGTGATAT 000320 000321 TAATATCTCT GGGTATAAGG ACTACCTTAT CGTTTAAATA TTTTATTTCC ATCTATAGCC TAATATAGAA CATTGATTTT 000400 000401 CTAGTAGAAA TTCTGGGAAG GGCTTTTCTG TCTCTGAAAT TGATTCAGTA CAGTTGACAG TTCATCACGG TTACCTGGTT 000480 000481 AAACACTTTT TTTTTTTTTT TAATTCTCCA GTGATCTAGG AAATTGTTTC ATTTTTAACA CAGGCTTATT TCTGATGGGG 000560 000561 ATGGGGGCAT AGAATAATAT GCCTAATAAG CTAAACGTTC TTAACGTTTC ATGTCTTAAA CTGTCTTTTT GAACATTGAG 000640 000641 ACCACCTCAA GTGCTGTAAA AATAAGAATG TTATATTAGG GGTGTGTGAG ACGCCCTAGT CTAAAATCTA TCTTTAAATA 000720 000721 TATTTCCTTT GTAATTTTCA AAGACTTCAG TAATTGTGTG TTATGGTGGA AATAATACTT TCCATTGGTC CACATTGCTC 000800 000801 TGGACCAAAC CTGGAGCATT TCTATAATTA GAGCTATCTA TGAATCATTA AAAATGGATC TAGAATAATT TTGGGGAGAG 000880 000881 GGAGTGTATC ATTTAGTTTA GGCTTACCTC AGCAGCACTT CATAGGGTGA GGAGTTGTTT GTTTCTTTAA AGGTATAACT 000960 000961 GCATTGTAAA ATGACTGGGT TTATTGTAAC AGTAATTTAT GGGGGCACCC TTTTTGGATT CTCCATTGCC TCAGTTTCCT 001040 001041 CAAGGAAAAA GTTACAGAGA TTAAGCTAAA TTTTGAATTT AGAGAATAAC TGCTGTGTAA TTTTGGTATA ATTACCATAA 001120 001121 ATTTAGTGTC TTAAAACACA ACATACATTA TTTCACAATT TCTGTAGGTC AAGAGTGTAG TTAGGTTTTC TGCTCAGGGT 001200 001201 CTCACAAGGC TGCAATAAAG GTGTCAGCCA GAGCTGCAGT CTTATCTGAA GCTAGGGGGT CCTCTTTTAT GCACATATGG 001280 001281 CAAAATCCAT TGCCTAGCAA CTGAAGAAAT CATGGGAACT GAACTATAAA TAGGCCAACT TTAATTGTTA ACTCCTCGGG 001360 001361 TTTGGTGGAT TATCTACCAT TTATATATAA AATTTCAGTT AGAATCCACC ATTGGCGTTT TGAAGGCCAA GATAGCTGAG 001440 001441 TATCTTATCC TTTTTGTAAC TTCTTGATTA TTTTACTTAT TGGCAAAATT CATTAACTGT CAGCCAATAA TTTAATATTA 001520 001521 TGGGAGGAAA AAATTTTGCC CAGATATCTG AGGCAATACT CCCAAACACT AACAAACTGA TGCCTAACAA ACTTGACATT 001600 001601 TTGAACACTT AAAGTTTTCC CTAAACTTTT TAATAAGCAC ATTAATAAAG TATGCTTTTA AATATATATG TACAATAATT 001680 001681 TTTAAAAGTT GCTGCAAGAT GCCTTCAAAT CAATATGCAC GTTGGTGGCA TTAGTGCAGT CTTCTATTTT TATTTTTTTG 001760 001761 AGACACAGTC TCGCTCTGTG GCCCAGGCTG GAGTGTAGTG GCGCAATCTC GGCTCACTGC AACCTCTGCC TCAAGGGTTC 001840 001841 AAGCAATTCT GCCTCAGCCT CCTGAGTAGC TGGGATTACA GGAGTACGCT ACCACGCCTG GCTAATTTTT GTATTTTTAG 001920 001921 TAGAAATGGG GTTTCACCGT ATTGGCCAGG CTGGTATTGG AATCCTGACC GCAAATGATC TGCCCACCTC GGCTTCCCAA 002000 002001 AGTGCTGGGA TTACAGGCGT GAGCCACTGC GCCCAACCAG CCTTAATTCT TAATAAAGGA AGTTGAAAAA TAATGAACAT 002080 002081 TGGTAAAACT ATTCTAGTGT GATCAGAAGC AAATTTGGAC TGTAGTGTCA AATTGATAAA AAACTAAGCA CACCAATCAT 002160 002161 GTATAAGAAA AGTAGATTTA ACATTTTTTT CCCTAAACAC TTAACCCAGA AGTTAACAAT AATCTTGAAA ATTCCTTTTA 002240 002241 AATCCAGGCC CTTTAGGTGA TGGCAGTTTG ACTCAGGATG TCCAAGTCCA GTGTATTTTC AATAAAATTG ACTTGACAGC 002320 002321 TACTGCTCTG GGTGTAAGAG CAGTTGACTG TGAGGAAAAG TAAATGGTTC TACAGATTCT TTATGATCTA CCTCCCACCA 002400 002401 GAGGACTGCA GTACTCCCTT GTTATTTATA TTTTCTGCCC CAATTTTTGC CTTCTCCACA AATTTTATAC CTTTTGTAGC 002480 002481 TGCCTACTCC AGATTACTTC ACCTTTCCAG ACTATCAGTT CTTCCACTTT TATTCTTCAT AAAGAAAATT CCAATAACCT 002560 002561 GTTTCACTTA GGTTTTTCTA TTACTCTTCA AGCATGAATC CTAATTTCCC TGACTATATC TTACCTCTGA TCTCCATAAC 002640 002641 TGATGGATTC CTATCCTAGA CTATGTTACT CTAATATTAC CCAAGATTTT CTCCAGCCTG TTTTTACTCT TACTTTGAAA 002720 002721 CAGCTGTTTA AAATGACTCG TAATCTGCTT AAATCTACAT GCTTTTTGTG GTTCTCAATC CAGTTACCTA CCTTCCAGAT 002800 002801 AATTCCCTCA CTGTCCTGTC CTCTCCATTC CTCTGATGTT TAAGCCCTGT GAGCCACCTT TCCCCCATCC TTTGTGCATA 002880 002881 GTTACCATTT TACTCTTTCT TGTTGCCCAG GCAGGAATGC AGTGGTGCCA TCTTGGCTCA CTGCAACCTC CACCTCCTAG 002960 002961 GTTCAAGCGA TTCTCCTGCC TCAGCCTCCT GAGTAGCTGG GACCACAAGC GTGCACCACC ACGCCCGGCT AATTTTTGTA 003040 003041 TTTTTAGTAG AGATGGGGTT TCACCACGTT GGCCAGGCTG GTCTCGAACT CCTGACCTCA GATGATCCAC CCTCCTTGGC 003120 003121 CTCCCAAAGT GCTGGGATTG CAGGCGTGAG CCACCGCCTG GCCACCATTT TACTCTTTTT AGGTACAGTA ATCTAATATC 003200 003201 CAAAGTCTTG GACTCAGCTA AAGAGGGTAT TTACCTTAAA AAAAAAAAAA AAAAGACTCC ATCTTTTGAT TCATAATTGT 003280 003281 GGTGGGGGCG GGGAATCAAG ACAACCTTAG TCACTTTGGT ATTACCATAA TTCTTGTCTT TTCAGGGTTG TCCTGTTCAG 003360 003361 CTGCATAAAA CATCATGTAT TCTAGGTATT TCCTACCTTC ACTTACATTT TTACTTGCCG ATGTGCTGCC TTCATAAATG 003440 003441 GGTATATTCC GCCACACATC TAGTAAGCCC CCAATGCAGT ACACAATGTG TATCACTGAT AAAACTCGCA CTTCTGCCAT 003520 003521 GTCAGTATTA TATTCAGTTG AGTGGTCTTT AGCATAGTGG CAGTCCTAGT CATCCTAACC TTTTAGTTAA GGTAAAATTA 003600 003601 CATATGTTTA TAGAACTCAT ATAGACAAGC TAGTTTTTAA AATCTTCCTT TTAACCAGTT TAGGATGATC TAGGATAGCT 003680 003681 AAGTTACCTA CATGGTGACT GTTCGGTCTA ATTCAGAAAC AGAAGTACTA AAAGAATACT AAAAAGTTTT TACCCATTAT 003760 003761 CTCTATCCCT GTTTTCTTTT TGCAATTCTC AGCTGCAGGG AGCAAGAAAA TACACAGCAG ATAGGAAATG TTTGTTTGCA 003840 003841 TCCTGGCTTT CTCAACCGCA CTTTACGTCC TTGAATATTC TAGATATTTA CTCCTTCAAG AAGTCAGGAG TATATCCAGG 003920 003921 CCTACCTATC ATCCTTGCCA TCCCCATTAA CCCTCATTTT TCAGTATGTG TTTTACATTT ATGGTTATTT TTCAGTCTAT 004000 004001 AGTATCTGTT CACTCATTGC TCTATCACAT CTGAGTTTCT CCGTCTTTCT TTCCACTAGA TTGTAAGCTC CTTAAGGGCA 004080 004081 AGGTCGGCAT ATAAGCAAAG TTCTGTAAAC ACCGTGAAGG TACCATGAGT TCTATGGGTA CTCAATAAAT GCTTGTGATA 004160 004161 ATG |
Predicted Small Protein
Name | NONHSAT092996_smProtein_2363:2596 |
Length | 78 |
Molecular weight | 8895.3692 |
Aromaticity | 0.155844155844 |
Instability index | 73.2871428571 |
Isoelectric point | 7.70257568359 |
Runs | 15 |
Runs residual | 0.0587238848108 |
Runs probability | 0.0386857445681 |
Amino acid sequence | MVLQILYDLPPTRGLQYSLVIYIFCPNFCLLHKFYTFCSCLLQITSPFQTISSSTFILHK ENSNNLFHLGFSITLQA |
Secondary structure | LEEEEEELLLLLLLEEEEEEEEEELLLLHHHHHHHHHHHHHHHHLLLLEEEELLEEEEEE LLLLLEEELLEEEEEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLL LLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTTToooooooooooooooo ooooooooooooooooo |