NONHSAT002390
Revision as of 19:22, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT002390 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3783 nt |
Genomic location |
chr1+:36391433..36395210 |
Exon number |
1 |
Exons |
36391433..36395210 |
Genome context |
|
Sequence |
000001 GCTGGGTTAT TTCTATGCAT GGGGGTAAGA AGGCTCAGAG AAGGATCCTG GCGGATACCC CAGTGAGAAA TCGTCAGTGG 000080
000081 CAGCCAGTGT GTACATACGT GGACCTAGCA TTCCTCTGGA GGCCAAGTGT TGTAAATTGG CCTGTGGCTA TCATCTGGCA 000160 000161 GACTCCCTTG GGAAAGAGCC AGCCAGCCCC ATGCTTCTTT TCAGCAGCAA GGGTTAGGGA GGTTGGTTGA ACTTGAAGAG 000240 000241 CAGATTGGAC ATGGAGCAGA TTTTGACCAG TTGAAATAAG ACATAAATTT ATGACTCCGA GTGAGGCAGA AATAAAGAAC 000320 000321 TTAGCAGGGG GAATAGGAGG AGGATGATTA TGGCAAATTT TGCTATAAAC TTTAGTTTTA GAAAAGATTG ATATTGAAAA 000400 000401 GCCTTCAGGA TTTGCCTGTG GTTGCTACTC AAGTTAAAAA GACTGGGAGC CTGCATTGTT TGGTCCTGGA GCTCAAGGTT 000480 000481 TTCAGTGAAG GCTTGTCCTG GCACCTCTGG GCATTCCTTT TCATTACTGG TTGAGCATCC TTCCTTCTGC TCTGTCAATT 000560 000561 GGCAAAATAT GCTGGAGCAC ATTCTGGACT AGCAGTTGCC TTGGGGTAGT CAGGCTGGGT ATTTGTTTGG TATCTCTTGG 000640 000641 TGTAGCAGAC CCCAGAATCT CATGGCAATT AGGATTTGGT GGCTAAACGA AAGAGTTAGT GCAAGGAAAA GCCTAGTTGG 000720 000721 AATTTCTGAG TCTGGGCCAT CCTTAAGCTG CTGTCTACTG CCTGAATGGG AAGTAATGTC GAATTGGAAA ATTAGCTCAC 000800 000801 CATTTTTGTT CTAGCTTTGC AGACATTTAT TCCTCTGATG ATAGGCTGAG AAATGCCTAG GCCGGCTTAG AAGGCACACA 000880 000881 GCATGACAGA AGTACTCCTT CAAAGCAGCT GTGTCAAGAA GGAAGAGCTG GAAAAGTGGA TTTGCTGGGG AATTAGATGC 000960 000961 ATTTAGTTTT CCACTTACGC ACAACTGCCT TCTCCAGTAT ATCATACCAA GGTTTTTTAG GCCTTTGTGG CTTACCCTGC 001040 001041 AGGAACATAC TGTGTCCTGT TGTTCTGGAC TGTAGCATCT TCACCACCAT CCTCTTGGCA ATGGTTTTTT GTTTGGGGTT 001120 001121 TTTTTTTTTT TTTTTTTGGA CAAAGTATAA TAATATTGAG GGACCTTTCT AGGGAGCCTT TGGTCCTTTG TCCCCATTTT 001200 001201 CCAAAGGGAG GGAACTTTCC TCTTAAAAGA GACAGTGGGA ACTTTTAGCC AGGTTTTTGG AAAAGGCCTG TGGGCTATTA 001280 001281 ATGAGAGTGA GCTGCAAAAG GAGGAAGGGT TTGTTTGGGT ACTTTGAAGT ACTTAGCTAG GTGTTTTCTA CAGTATCTTA 001360 001361 TATAATTGCA TCTTACAGCA TCTTTACATG CGAAATAGTT TATCAGTTAT CTTCAATTGC ATATTACAAA ATTCTGATTA 001440 001441 AATTTTTCTT AAATAAGAAA ACTATCATTT CATATGACAA GAAATCCTAA TTTAATGTTA CTCCAAGGTT GGTTAATTCA 001520 001521 GTGGCTCAGT GATAACACCA AAGACTCAGT TTCTTGAAAT TTTTTTGCTC TGCCATCCTC CATGTTTATC CTCACGCCAG 001600 001601 TTCGCCTCAT GGTCCCAATA TGGCTACTGT AGTTCTGGGA AGGAAATGCT GACAGAACCG TGTCTGGCAA AAGAGAGACA 001680 001681 GATTTTTCTG TGTCCTTCTA AAGCAAGGAA GTCTTCCCCT GGAAGCTCCA GCAGATACGG CCTCATGGCT TTGCTAGAAA 001760 001761 TGGGTCATCT CACTCCTGTC ATTGGCAAAG CAAGTAAGAT CATCCATCAG GAGTGGCTTA GATTAATGAA TTATCCTTTG 001840 001841 AGTCGTGTAG ACTAGAAAGT TCAGTCATGT CTACTAGCAA GAAAGGAGAT AAGGGCTGTT GGATAAGCAG CATCTGGTCT 001920 001921 CAAAGGTACT TCAACTTTTA CAGATGAGAA ACATGAATCA GAGTGACTTT CCCAGGCTCA CAGCAAGTAA GAGAGGGCCT 002000 002001 TCAGTGTTAG CTGTGTCTGT CCCTAAAGCC CATGTTTTAT ATTGTATCTT GCTAGAGTAT AAAGTAACTT ACTTTCTACC 002080 002081 TTGTAGAAAC TGATGGTCTA GGAGAAGAGA TTTGAACTCA GGTGCCCAGT TGACTCTAAT CTTGGCCCAT GTGAGAGGAT 002160 002161 TGTACTCAGT TGCTCTCCTC ATCCAGTGAT GTTTCTTGTC TAACACAAGA AGCCTAGGAG TAGAAAGTCC TAAGCAGAGT 002240 002241 AGAATAATAG CGGCAGCAGG GAGGGAAGTG TGAACTGTGT GTCCCTGAGC CTGACTTACT GGGCAGGGAC ATGACACTTA 002320 002321 AAGCGGCAGC TGGCCACTCT GTCTTTCCTG CATGCACTGA GTATTTGGTA GCTCATTAGT GACCAGTGAT ATTGATCATC 002400 002401 TTTTCATGTG CTCACCTACT ATCCCCATAT CTTTGTTGTT TGCATCTTTT ACCCATTGTA TTTGTTGTTT TTGAGACAGT 002480 002481 GTCTCACTCT GTCACCCAGG CTGGAGTGCA GTCTCATGAT CGCGGCTCAC TGCAGTTTCT GCCTCCTGGG CTCAAGCAAT 002560 002561 CCTCCCACCT CAGCCTCCTG AGTAGCTGGG CTTACAGGCG CACACCACCA TGCCCAGCTA ATTAAAAAAA AAATTTTTTT 002640 002641 TGTAGCAGTT CGGTCTCATT AGTATTGCCC AGGCTGGCCT CTCTTAGCTT CAAGCTATCC TCCCGCCTCG GCCTCCCAAA 002720 002721 GTGCTGGAAT TACAGGCATA AGCCACAAGC CACTGGGCCC AGCCTCTTTT ACCTGTTTCA AAATTGAGTT TTATTGAGTT 002800 002801 GTAAGAGTTC TTTATTCATT TTAAACACAA GTCCTTTGTT GGATATATCT TTTACATCTA TTTTTCCCAG TCTGTGGCTT 002880 002881 GCCTTTTCAT TTTGAAGAGC AAAAGTTTAA AATTTTGTGA ATTTATTAAA GCTCCGTTTG TTGCTTTTTT CTGTTCTAGT 002960 002961 TTATACTTTT GTATCATATT TTAGGAAATT TTGCACTGGG TATTTGATGG CTCCTGAGGA GGTTCAACTT TCAGAGCGCA 003040 003041 CTGATTTCTC TGCACCTGAG ATTTTGTACT ATTTCTGTAT TTCTTTCTTC TCAGAACAAC CAGTGTCACC AGGTATGAGG 003120 003121 GCAGAGTTTT AGCTTGTTTG CTGAGCCCCA TTCTTGAAGC TCATTTATTT ATTCACCTAT CTGTCCATCA ATCCAACAAA 003200 003201 TATACTGAAT GCTGCTATGT GCCAGGTACT GGCACTGTTC TAGGTACTGG GGCAATGACA GTTAAGATAA TACCCAATGA 003280 003281 CCCTGCTCTG TACCCTTAAG AGCAGACTCA GTTGGGAATG AGTTATCCAA ATATAGGGTG TACATGTAGT CAGGAGAGAG 003360 003361 CCTCATACAG CTTTGCCTTT GGCAGAATCC TTCAAACCTC TTTGTCTTCC TACTTCTTGA TATTACAAAT CATGAGCCTT 003440 003441 TCACATGCAT TGACTCTAAA GAGGTGGGTT CCTGGATAGC AGAAGTAGAT AGGAAGGCAT CATTGACATT TACTGAGATG 003520 003521 GATTGAATCA GAGGGTGTAA ATTCTGCTCC ATCAATGTTG AAAAAGACTA GCCCACCCCA AAGGTTTATC ACTGTCACCA 003600 003601 TGTCTAATGT CTATTCTGGA AGAAGCTGAA GAAGTCTGCC TTTGTTTAGG GAACCGGTTC CAGAATCAGA GGGGTTGAGG 003680 003681 ATATAAAAGA CCCTTGCACA AGAGTTGGTA TTTACCCTGT CAGATGCTGC TACCAAGATT TGGATTGTGT ACAGTCGAGG 003760 003761 ATTAAAAATG ACTTTTAAGA TGC |
Predicted Small Protein
Name | NONHSAT002390_smProtein_14:229 |
Length | 72 |
Molecular weight | 8103.3791 |
Aromaticity | 0.112676056338 |
Instability index | 56.9492957746 |
Isoelectric point | 10.8792114258 |
Runs | 11 |
Runs residual | 0.00637509266123 |
Runs probability | 0.0418091888681 |
Amino acid sequence | MHGGKKAQRRILADTPVRNRQWQPVCTYVDLAFLWRPSVVNWPVAIIWQTPLGKSQPAPC FFSAARVREVG |
Secondary structure | LLLLHHHHHHHHLLLLLLLLLLLEEEEEEEEEEEELLLEELLLEEEEEELLLLLLLLLLL LLLLEEEEELL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLL LLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTToooooooooooo ooooooooooo |