NONHSAT007392
Revision as of 19:45, 16 October 2014 by 124.16.129.48 (talk)
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT007392 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
4577 nt |
Genomic location |
chr1+:167391147..167395671 |
Exon number |
1 |
Exons |
167391147..167395671 |
Genome context |
|
Sequence |
000001 GGTTGGGTGG GGGAAGAGGA GATGTTGATT ATGTTAGAAG GAAAACATTG CTCGTGTGTG TGTTTGTTTT TTCTTATATC 000080
000081 TGTCTTGCCA AAGGAAACTT GATTTTCCCT GTGATTGGCT TTGGCCTCTG TGGTCTGGTC TGCAGCAGTG TGTGGTGGCA 000160 000161 TGCAGGTAAC ATATGGGGTG TCCAGTAGGT TCAGGGACCC TGAGGGTGCA TTTACATCCC TTCCTATGGT TGCCCATGCC 000240 000241 CCCCAGACCC TGCCAACCTC TCCTAATGAT TCATTACCTC TGTACATAGC AAAAGCATAG GCAAAGGATG AATGCGTGAA 000320 000321 TGCCTGGATG TGCAGTTGAG AAACAGAGGC AAACATAGAC ATGCACCAAT TAATTTGGAG CCAAGAGGTG AGTGATTGAT 000400 000401 GTATCTTAAA TCTAGGAAAG TTAAAGTGAA ACAGGTTCTT TGTGTTGCCC TCTGTCAAGT TACTGAATGT TGTGCTAATA 000480 000481 ACACAACACT TTAAAACCTT ACTTACTTTT CTCATACCAA GGCTAGTTCT TTCTAGACCA AAAACACAAA CAGGATAAAA 000560 000561 AGCAAACCAA GAAGTTGAAA GCTAACCTGC CCACCTCACC CCTGTGATAC AAAGTGTGAA CCTTAAGGAT TAGTTGGTGG 000640 000641 GATTGAGGAG AGAATTATTC TTGGTGGGAA CATGAATGAG AAATGATGCT GGCTTAGGAA AAATCACAAG CCCTTTCTGC 000720 000721 CCATACTCTG GGACAAACTT TCTTGGCTCC CTGAGTTTGG ATATAGACTG TATCTCTAGA AAGGCTATTT TTTTAAATAA 000800 000801 ATGATCCCAC AGAACTTAAG TGGGATTTGG TTTAGATACC AAAGACACTG CTAATGTCAT TGCTTATCCT TAAGTTTTCA 000880 000881 AAACAGGCAG AGGGAATAGG AGCAAAAAGC CAAAATTTGG AAAAGCTTTA CTTTATCTCT TTCCTTCCCT TTTCCCCTTT 000960 000961 TCCCAGTCCC CTGCTTTTTG AAGGAAGTCT TCTTGGTTAT CCTGGCTTTG GAAAAGAGAT TTATTTTGTT TTGCTCTGCT 001040 001041 GGCTCTTTAA AGATGGATAG TTGCTCAATG TAGCAGTGAT GTTCTTGGAA TTGCTGAGAA ATTTGGGGAG GGCAAAAGAT 001120 001121 AGGGGTAGAA TTTTTTCATT ATTTCCCCTT ATCTAATACT TTTAAATAGA ACCAACACAG CCTATATGAG TTCAGGCAAT 001200 001201 ATTTAGATGT GGTATCTCCA TCTGTCTCCT GTAAAAGATA AGAATTTTCA AGAACAGGAT TACGTGGAAA ACCAAAAGAT 001280 001281 CTTCCCTTAC TCTCCTATAA ATGTTTTGTT CCAAATGTTT TTATATATGG GCTCTAGGGA GTCAGGTAGT TCATTGTTTC 001360 001361 GGTGTACTAT TGATAGGACA CAGAAAGGGA GAGAGGGTAA AGAAATGTAT CGCTCTCTGA ATATTGCATC AAAAATGATT 001440 001441 AGGTTGCAGA ACTTCATGAA AGCTTTACTA ATAATCTTAT TGTTCTGACA TTATGTAAAG GTGGTATTAA TATTGTATGA 001520 001521 CTTGTCAAAG TGCTAGATAG GTTTATAAGT AGGTAGTAGG GATGTTGAAG ATTAGAGCAC TTGAAACAGA AGTTCTGGGA 001600 001601 AAACAAGGTG TGTGTAATGG AACACCACTT TGAGCACAGA AACAAAGGTC CCTTGGACCT GGTAGGGAAG ATGTGATTTA 001680 001681 TGATTGTTTC TGTGTCCCTG TATCTGCCCA CCCTGCACAG GGCTCCACCA CCCAGGGCCA CCTTCTGGTT TAAACCCAGG 001760 001761 ACACTGTCAA AAAGTTAAGA CCCCAAAACT AATTTACTGT AAAAAACATT GAGGACTGCT GCAAAGTTTT CCCTTGTTTT 001840 001841 CTTTGTGTAC TTGTTCATCA TTGTATAAGT TAGCCACAGC TTCACAAGAG CAGCTTAAGG CTTCTTTCAT AAATTGGCAG 001920 001921 TGGCATTGAG TTCTCAAACA TTATATCCCA AAGTCTGCAG GCAGACAGCT GGATACAGCG CTGTGTATAA ATGAGACGTC 002000 002001 CAAACACTTG AGTTTCTTAA GATTGGGATC TCTTTCAAAT GAAAAAGGAC AGAGCCAAGT AGAGAAAAGA CTTTGTGCTC 002080 002081 CCACCCAGCC TTAATGAGTC TCATGGTCTA AAAGTATAGG AAGAAATGAA ATGCACTTTC AGAAGCTAAA ATGACAGTGT 002160 002161 CTGCTACAAA AGGCTGTAGT TGTAGGCAGT CGGGGATGCC ATGTCCTTGG TTCCATTCCT GCGTGAGTCT GCAGAAGGCA 002240 002241 CACACTTTGT AAGAGTAGAG TGGACTAGTG CCAGCCTGAA TAGGTTTAAA ACTGCAAACA GTTGGAGAAC ATGGAACAGG 002320 002321 TTGGTGCAGG AAGCCTAAGA TTTTGCAATC ATATTATAAC ATTGGCTTTT GACAACATAA ATGTTGTATC TTCCCTAAGG 002400 002401 TCAGGTCGGG GAAAGAAAGA CTTCCAGCTT CTTACCTCTG CGTGCATGGG CACGTGTGCA TTGCTCAGTC CGCAGGAGGT 002480 002481 CTCACTCCAC AGGAAACGCT CTCCTCCCGC ATAAGTCTGT ACTTCCATCC CCTCATCTGT GGTAGTAGTG AAGGCTAGGT 002560 002561 GAGTAAGCGT GGGCTGTTCT ACCCACCAGA AGTCCAGGAG CTGTTGTATA CCTCATTTCT AACTCGTGAC CGAGTGACTT 002640 002641 GCTTTAACTT TCTCGAAATC CTACAGAGTT GCCAAGTCTG CCCTCCCTCC TCAGTCATGT TAAACTCTGG CCTATAGCAT 002720 002721 CATGGGACCT GTAGCCTAGG GTGGGACCCC CTAAAGCCTC TGAATGTCGC TGCTTAAAAG CTACTGCAAA CTGAGGGCAA 002800 002801 ATTGCAATCT TCTATTCCTT TTTGTTGCAA GGGGTCTTCA CAGGTCTCTT AACATCTGCT TTCCCTGCCA CCCTGCCTTT 002880 002881 AGGGGCTGGC CAGCTATCCA CACCCCTAAC CCACCCTGTG TTTCTGACAG CTGGCCACAC GTCAACTTCT GTACTTGCCT 002960 002961 TTTCCTTGGT GGGGTAGAGG CCAACCCCTT CTCCTCTGAG GCCTCAGGGT TCTGTTTCTT TTCAGGACTT TGGGTAGAAG 003040 003041 GGAAGACACC AAAGGCTCCT TTAAGCTGAC TGCTGCATAC ACATTTCACT TTTTTTCCTT TGACATGACC AAAAATATCC 003120 003121 AAATATTTAA GTTTATTACT ATTATTATTA TTATTATTTG ACAATCTTAT ATCCAATGGG CTCTCTAGAA GCTGCATCCC 003200 003201 CAGCCCTTTC ACCTTTTCTT TGAATGTAGT TCCCAACCTT CAATTCCCAC CCCTAATGCT GACAAAAAGC TTAGCCAGGT 003280 003281 CATGATACTG CTGCTATAAG CCAGGGGAGG GTGGTTTCTT TGTTTTGTTT TGTTTTGTTT TGTTTTTTAA ATTTCCAGCC 003360 003361 AAAACCAAAG ATTTCTTAAT GATTGTATAA ACTCAAAACA AACAAAAGAA CCAAAGAAAA GGGAAGTCTT CAGCATCAGT 003440 003441 CCAGTCTGTG GTGTCCTGGC ACTTAGAAGA GTGAGGCCAG GGAAGGTGGG GCGGGGGGAC CCTCTGACTG GATCAGAAAG 003520 003521 GGCAGGCAAG CTGCTTACCA CCTTCCAGGG TCCAGCACAG GTGCATGCCC CTAGCTTTGG CCCTCACAAA CTTGTGAGCA 003600 003601 TGCCCTGAAA CAAATTGGCA TTTCAGATTT TCCAAAACAA AAGTCAAAAA ACCCCATCAC CACCATCATC CACCCTACAC 003680 003681 CAACCAGGGT CACTATGGGG ACTTAGCACA GGGCCTAGGG AGGGTGGGAG CTGCTGCTGG ACTGGCCCGA GGACTCCACA 003760 003761 GAGTGGGGGA CGTTGAAGAC ACTGGCGCAC GATTGGCTGC TCTGCTGGGT GCTTTAACCT CTGGGGCTGG GCGAATGCAC 003840 003841 GCCACGGTGC CCTTCTGAGC CTTTTTTTCT TTTCCTGTAC TGGAACTGCT TGGAAGTGGC TGTCCTGTTT GTGAGAAAAC 003920 003921 ATGCAGAAAG ATTATCAAGC TTTTCATTTC TCTTTATTGT AGTTTTCTTT CCTTTTTGCA GCACCACTGT GCAACTATGC 004000 004001 ATTGTACTTC ACAACCTTTT GTGCTAGGTA GATGCCTGTG ACTTTTTAAC TTGGGGGGTG GGGGGATTGC AAATGAAGGA 004080 004081 ACTTTTTACA TGGATCTTTT TAATCTCAGT TGGTTGGGGG AGGGGGGTAC TTGGTTCTTG GGTCACACAA GCTCTATCCC 004160 004161 AAAGCAAAAT CCAAATGTTA ATAATATTAG CCTGATGCAG ATACCAAAGA TAATTTCTTT CCTGCAGAAC CTTAGACTCG 004240 004241 TGTATTAAGT ACGATTACCC AGCACTTGCA TTAGTCTAAC CTCAGTAATT CCAAAGCTTA GATGTATATT TTGGTATATT 004320 004321 TCTGGGATAT TAAAAAAAAT GTCGTTTAAC TTCTTGTTTG TTTCAGTGTA ATGCTCTTAA AGTCATAGCA TGAAAATAAT 004400 004401 TGAACTGTCC TATTCTTAGT AGTTTGAAAT AATAGTATTT TTGTATGTTT TGGGTGTGTC TATGTATGTA TTAACATAAC 004480 004481 AGTTTTCACT GCCTAGGTGT TCATAATAAA AAAGAAAATG AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA 004560 004561 AGAAAAAAAA AAAAAAA |
Predicted Small Protein
Name | NONHSAT007392_smProtein_2150:2251 |
Length | 34 |
Molecular weight | 3583.1941 |
Aromaticity | 0.0606060606061 |
Instability index | 63.8909090909 |
Isoelectric point | 8.93634033203 |
Runs | 6 |
Runs residual | 0.00230566534914 |
Runs probability | 0.0137784843667 |
Amino acid sequence | MTVSATKGCSCRQSGMPCPWFHSCVSLQKAHTL |
Secondary structure | LEEEELLLLLLLLLLLLLLLLEEEEHHHHLLLL |
PRMN | - |
PiMo | - |