NONHSAT132734
Revision as of 07:20, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT132734 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(AS),antisense |
Length |
3677 nt |
Genomic location |
chr9+:85882090..85885748 |
Exon number |
1 |
Exons |
85882090..85885748 |
Genome context |
|
Sequence |
000001 CATGGCCCAG GGCAGCCTTT CCCTAACAGT CCGTTCTGTT TTAAAGGACC TAGGCAGGAC CCACTGAATG AATCAAATGT 000080
000081 CAGGTTCCTA ATGCGGCCAA CAGAAATAAC TCATGAGGGA TCAGCATTGG GAGGGGAGGA GGGAGGGGAC GCTATTTTTA 000160 000161 AACTCTCCAC TCACCCCTCT AACAAACAAT GAAAGATTAT GCATCATCCC TACTCTAGCC TTTCTAAACC TTCCGGACCA 000240 000241 AAACAGAGGA CCCTGTCCAA ATGCCTCATC ATTTCCTAAG AATCAAATGT CCCCAAAAGA TAAGATGACA ACTGGATAAT 000320 000321 TCCATAATGG AGAAATAACC CACTTTTTCT TCTAAAAATT GCTCCTCCAG CCTTTATTAT ATTCTACAGC AGTACTGTCC 000400 000401 AGTAAGATTA TAACACAAGC CACTTCAAAG AGGGAAAAAA AGCATTTAAA AAGCAAAATA AATGTATTAC AATTAATTTT 000480 000481 AATAATGTGT TTTATTTGAA ATCGAGATAT TCAAATAGTA TCTCAACAGG TAATGATATC AAAATTTATT AATAATTAAT 000560 000561 CAACTCTTTT ATTAATAAAG AGTTTGCATT CTTTTTTGGG ACGAAGCCTT TGGAATTAGT GTGTGTTGCA CACTGCACAT 000640 000641 GTATAGCACA TCTCAATTCG AACCAGCTCC ATTTCAAGTG TTCAGTAGCT ATATATGGTT GCTGTCATGG TAAGCTCAGC 000720 000721 TCTTTTCAAA GTGCTGGATT CCTCACATGC CTTATCTCCA TCTCATAACA ATGCTAATCT TTTCTTCACT TTACAGATAA 000800 000801 GGAAACGACA ACTTAGAGAG AGTAACTGAC CTGACCACAA TCACGAAGTT AGTAAGTGGC AAAGCCATGA TTTGAACCTA 000880 000881 GGCTTCCAAT TAATATCGGC TGACTAAAGT TAGTGTTCTA AATGCAGGTG CCATGCAACC ACTACATTCT GACTTTTCAT 000960 000961 GAAAAGGATG AGAAGAAAAA ATTTTCCTCA CACAATTTCA ACACGCCCGC ATACATTCTT CTACTTTAAA TATCTGTCAC 001040 001041 CAAAAGATGA TTTTCTAATA ATCCTCTATG AAACAAAGGT TTATTCAGAG CAGGAATTGA AATTCCATGT TGTTATGCAT 001120 001121 CAATATAAAA TTGATTTAGC ATTTCTGGAA AGAAAATTAG CAAAATACAT GGAGTTTTAT AGCTGTGGTA TTCTTTGAAC 001200 001201 CAGAAATTCC ACTTTTAAGA ATTAACCCTG AGAAAATAAT CAGAAATGCT GACAAAAATC TTAAGACAAA GATGTTCATC 001280 001281 AGAGTATCAT TTATTATAGC CAAAAATGTT TTTTAAGTCA ACCTATATTT CCAGTGGGAA AATGGTTAAA TACATGTGAT 001360 001361 GAAATATTGC ACAGACATTA AAATTCATGT TTAGAAGAAT TTAATGATGT GAGAAAATGC TTGCAATATA CTACTAACTG 001440 001441 AAAAAAGCAT CTTTATATAA ATGGTGTGGC ATCGACTATG TAAAACTGCA CACAGGATAA ATGTAAGACC AGACAGTAAA 001520 001521 TCCCAGAAGG GAAAAAGGGT GTTGCCAGCC ATGCACTGTG GCTGAGGTGG GGCAGGCCAT TTCCAGGGAC CTCAATGGGC 001600 001601 CCCCCACTCC CCTCTCCTGG GTGAGCAGCC TCCAGTGTGG CAGAGGAGTT CCTACTCTCA CAGGAGTTAG TTAATTTTCA 001680 001681 ACCCTGAAGC TTGAAAGGAA AATATCCCTA AAAGTTCTCA AAATCTTCAA CCCTTTGCAA TTCCCCCTGA TTATATAATT 001760 001761 CTGAGCAGAA TCCCCAGGTT TAAAACAGAT AGACTGACGC AAAGGTGGGG CCCAGGACTA GTACCTACTA CACCTCCCTC 001840 001841 ACTAGTCACC AACAATGGTT CTTGAAGAAC TACTAAAAAT CTTTAGGACA CTGAAGAACA AATCTGAAAA TCACTGTTCA 001920 001921 CAATAAATCA CTACTTTGCA GTAACACACG ATGAATTTCA TAGATTAACC GGGGCTCATT TGCATGGCAG TAGGCCATGG 002000 002001 CTCAATACTG AGGAAATCTC CCTTTGGCCT GTCTGAAGGG AATATAGATA AATCTTTATG TTTAACATCA TGTTAAAACA 002080 002081 ACATATGACC TGACAGCTCA CTTGAAACAA ACAGACCTTC CAAAGACAAA AGAGAAAACA AGTAAAAAAC CTGAAACAAA 002160 002161 ACTATCACCA TATTTTATTT CTGTTTTTTT CTACCAGGAT AGTTATTCTC CATAATTCTC AAGCTTAACA TCTCACCATT 002240 002241 GTTTCAAATG CCTCCTTCCT ACCTTTCATT TTAAAAGTAT TATTATCTTT GGGAGGCCGA GGCCGGCAGA TCACTTGAGA 002320 002321 TCAGGAGTTC AAAACAAGCC TGGCCAACAT GGTGAAACCC CATCTCTATT AAAAATACAA AAAAATTAGC CAGGCGTGGT 002400 002401 GGCGGGCACC TGTAGTCCCA GGTACTCGGG AGGCTGAGGC AGGAGAATTG CATAAACCCG GGAGGCGGAG GTTGCAGCAA 002480 002481 GCCGAGATCT CACCGCCGCA CTCTAGCCTG GGAGACAGAG TGAGACTCTG TCTCAAAAAA CAAAAGTATT ATTATTATTT 002560 002561 TACTATAAAC AAACAAACAA AAGTATTATT ATTATTTTAA CTATAGCCAG TCATAATATT TAGCATTTCA CATGTTTTTC 002640 002641 ACTTTTTCCC CTCTTAAACC TGCTCTCACT CTTTACGCTA CTTTTCAGAG ATCGTAAGTA GATTCCTTTA CTCTTGCTTT 002720 002721 TTATGGATCT TCTCCTTTCA TGGAGAAAGA TAAGCTAGCA AGACAAGCAT TCTATATTGC CTCAGCCATT TCTCTCTACC 002800 002801 TTGTCTGACT CTGCCCACAG GGGTGTCTAC CTTTCAAGAG GAACAAGAAA AGAGAGGTGG GAATATGGAA CCAAGCCAAA 002880 002881 GATTCTGCAG GATCCTGCAC AGTGAGCATT GTTCTGGTTC AGGCCACTGT GCTCAACTGA ACAGTATCAG TAGCACAACA 002960 002961 TTTGGATGCC CTTGAATACT GTTCCTGTTT CAATTCATTT GTTTGTCTGA GAATTGGGAA TGCATGTCTG GGCAGTGACA 003040 003041 AGAGGCCAAA GAAAGCAGAA GATGTGTGAA GAGGAGAATC GATTTTCCAT AATGAGATGT CAGAAACACT GCTTGCTAAG 003120 003121 TCAGCCTGAA ACCAAAGAAG AAGAATGGCA TTCAGTGATA AGAACTGTTC ATGAGCCTGA ATTCCATGGC TGCTCCTGCA 003200 003201 CAAACCACCA GACACAGATC CGGGGAAAGG CAACAAAGTT GCCTCTACTT TGTGAGTGGC TAGAAGTTAC TGGACATCTG 003280 003281 GGAGCCCTGG TGCCTTGACT GTAAAATGGA GACAACAACT CCTCTCATGG TTGTTATGAC AAGGAAATGA GAGATACATA 003360 003361 TCAAGTGCCT AACATAGAGC TGGCTCCTAT GAACCAGAAC TTATTAAGCA ATTGTAGAAG GCAAGATTTA AAGCACAGAC 003440 003441 TTTGGAGCAG TCCTTGGGTT CCAATCCTGG CTGCATCGTT TATCATCTCT GAGCCTCAGT TTCCACATCT GTAACAAAAG 003520 003521 CTTTCATTTT ACAGATGTAA AAGCAGTGTG TACCTCCAAG GGGTGGTTGT GAGGATTAAT CAAGTTAATA CACATGGCAT 003600 003601 TCTCAGATCA GTGCCTTGCA CGGCAATTTA CTCAATAAAT GTTAGCGATT TTTTTTCAAA AAAAAAAAAA AAAAAAA |
Predicted Small Protein
Name | NONHSAT132734_smProtein_2864:2974 |
Length | 37 |
Molecular weight | 3909.3503 |
Aromaticity | 0.0555555555556 |
Instability index | 48.5055555556 |
Isoelectric point | 6.79425048828 |
Runs | 6 |
Runs residual | 0.0137917637918 |
Runs probability | 0.0456338691632 |
Amino acid sequence | MEPSQRFCRILHSEHCSGSGHCAQLNSISSTTFGCP |
Secondary structure | LLLLLLEEEHHHLLLLLLLLLEEELLLLLLLLLLLL |
PRMN | - |
PiMo | - |