ENST00000436955.1
Revision as of 08:39, 25 July 2014 by 124.16.129.48 (talk) (Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
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===Functio...")
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000436955.1 |
Source |
Gencode19 |
Same with |
lnc-IVNS1ABP-2:1,NONHSAT008432 |
Classification |
intergenic |
Length |
642 nt |
Genomic location |
chr1-:185576316..185597659 |
Exon number |
5 |
Exons |
185576316..185576533,185590593..185590718,185591859..185591971,185595624..185595687,185597539..185597659 |
Genome context |
|
Sequence |
000001 ACATTTGCAC AGATGCTGCT GCTATAGTAC TTTCAGGCAA GGCCAAGGCT TCTTGAAAGG CTGGTCATGC CCCAGTGATC 000080
000081 AATGAAGAAC TCAGGGATAT CCCAAAACTC AGGACTATAA GGCACAATGG GGGAGCAGGT ACCAGGTGGC CAGCATCCTA 000160 000161 AATGACTCTC AGCAGCTGCA GAGAAGACCA TAATGGATGG ATATATAGGC TGACGTATAT CAGTTGGCTT CAGTTGTTTG 000240 000241 GTGATATTCA CCAGATCTAT ATTTTGCTAT TTTATGGATA TTATTTTCAA TTTCTGAGTT TTGTCTTTTC CAGAATGCCG 000320 000321 TACAGTTGAA ATCATACGGT ATATAGACTT TGCAGGTTTT TATGCGGACA TGTTTTTTGA CTCCTTTGGG CAAATACCAA 000400 000401 GGAGCAAGAT TGCTGGATCA TATGGAAAGA GGCATTACCA TATCAAAGCC TTTAGCCTTC TTGCATCACG ACAAAAATTC 000480 000481 GAACTTGGTG TTTGAAGAAC ATGAAAAATG AGGAGGAATA AAATAATCAT GAGTCTCCTG GTCATTAACT GCATGAAGTT 000560 000561 GAGCTGGTCA CTTAAGCCAT TCCTAATATG TAACTTGAGA GTATAGTATT AGATATTCAG TAAATTCCCT TCAAAATTCA 000640 000641 TA |
Predicted Small Protein
Name | ENST00000436955.1_smProtein_161:328 |
Length | 56 |
Molecular weight | 6831.8028 |
Aromaticity | 0.272727272727 |
Instability index | 52.0874545455 |
Isoelectric point | 6.69024658203 |
Runs | 4 |
Runs residual | 0.0787878787879 |
Runs probability | 0.0416004239535 |
Amino acid sequence | MTLSSCREDHNGWIYRLTYISWLQLFGDIHQIYILLFYGYYFQFLSFVFSRMPYS |
Secondary structure | LLLLLLLLLLLLEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTToooooooooooo |