NONHSAT088931
Revision as of 19:22, 25 July 2014 by 124.16.129.48 (talk) (Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
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===Functio...")
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT088931 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
6273 nt |
Genomic location |
chr3-:33537737..33546943 |
Exon number |
2 |
Exons |
33537737..33540209,33543144..33546943 |
Genome context |
|
Sequence |
000001 gggtttcaac ttcattcttt ttcatgtACT GAAAATACTT TTTTATTTTC AGTAAGAAAC TTACCTAACT GCCTACCATC 000080
000081 CCCCATGCTC AGTAGCCTTG ATgatggtgg cccatatttg tggtgtagct tgctggtgcc aggagggaca tggaccttgt 000160 000161 tctcaaaaaa ttgtggttat gttttgttgt tgttgttgtt gttgttgttg ttgttgttgt tgtttttatc tctggcattc 000240 000241 cctgagaggc tggcacagag actagccttt gtttcacctc ccatcaggct gaagtggctt cctaagtgga gtctattgaa 000320 000321 aagatttaaa aacatactac ccatagccac ctgaggcaag ggagagcaga caagacaagc agcaaacaaa agcctgggaa 000400 000401 ggaggaagct gatgaagaag ataatttgtg aaataagggt tttgctgggc ccacgtgtac tgaggaatcc accaaaagta 000480 000481 tgctcagaaa agactttaga gcaggggtcc ctaaccccca ggccatggac tggtactgat ccatggcctg ttaggaactg 000560 000561 ggccacacag caggaggtga gcagtgggca agcgagcatt accacctgag cttcgcctcc tgtcagatca gcagtggcat 000640 000641 tagattctta cagaagtatg aagcctattg tgagttgcac atatgaggga tctaggttcc atgcttctta tgagaatcta 000720 000721 atgcctgatg atctgaggtg gaacagtttc atcctgaaac catcccccca tcacccttcc ccatccgtgg aaaaattgcc 000800 000801 ttccacaaaa ccagtccctg gtgccaaaaa ggctggggac caccgtctta gagggcccta ggcttggacc tctggatgtt 000880 000881 ctttgggctc catgcaagta ggagttgggc taagacagaa ttgtaggcag cctagctaat tgaatgatta cgcagctcag 000960 000961 agtcaatctg caaagactgg gagagtttgt cttgttttgt tttgacccca ggcatttaag gaaatctctg tcaggtcact 001040 001041 ggctaactgc tgaggtaaca aagagacttc agtgaccaca taccgtaaac aaaatttact caaacaaatc agtgatctaa 001120 001121 atatagctac taaaactaca aaactcatag aagaaaacat agcgataaat ctttatgacc ttagatttaa gttcatcctc 001200 001201 tatggcagtg gattattaga tatgacacct aaagcatcaa tgataaataa aaaataggtt aattgaactt catcaaaatt 001280 001281 aataactttt gttcatctca ggacctaatc aaaaaactga aaagacaacc tatagtatgg gagaacattc ttgcaaatta 001360 001361 tatatctgat aatggtctac tatccagagt atatataaag aactcttata actcaacagc aaaaggataa ataactttta 001440 001441 aatggacaaa ggacttgaat agctatttct tcaaagaaga tgtacaaatg gccagcaagt acgtgaaaag atgcttggtg 001520 001521 tcattagtaa ttacggaaat caaaaccaca atgagatacc acttcatacc cactgggatg gttgtgatca aaagaacaaa 001600 001601 aataacaggt tttgatgagg atgtacaaaa attggaaccc ttatacattg cttgcataaa tacaaattgg tggtacagct 001680 001681 gctgtggaat gcagtttggc agttcctcaa aaagttaaca taaaggccgg gcacggtggc tcacacctgt aatcccagca 001760 001761 ctttgggagt ccgaggcggg tgaatcactt gaggtcagga attgaagagc agcctggcca acgtgatgca accccatctc 001840 001841 taccaaaaat acaaaaatta gccaggcatg gtggcgggcg cctgtaatcg cagctatgtg ggagaccgag gcaggagaat 001920 001921 tgcttgaacc ctggaggtgg aggttgcagt gagctgagat cacatactgc agtccagcct aggcaacgga gcaagacgtc 002000 002001 atctcaagga aaaaaaaaaa aaggaaaaag ataaagttaa cacaaaattg tcatataacc cacctattct attcccaggt 002080 002081 atatacccaa aagaagtcaa agcaaatatt taaatagtta tacatgaatg ttcatagcag cactattcac agtagccaaa 002160 002161 aggtgaaaac aacccaaata tccattaata aatggataaa caacatgata tatcatacaa tggaatatta tccaatcata 002240 002241 aaTATTACAT TCCTATTCCA CTCCTTGCCC ATAATACCTC ATTCTGCCAT GCGATTCCCT AACTGTTCTG GGAAGGGACA 002320 002321 GTGCGTGTCT TTTTGGACAC TGAACATTAT TTACCTGGCC TGTTCTTGTC ACATACCAGG CACTTAAATA TTTAAACATT 002400 002401 GAATGCCATA CTCTTTGCAG TGTTATTTGT AATAGGAAAA ATTTAGCAGG AAGGAGGTTA TTGGGGAGGA AGATGTAAAC 002480 002481 TTACAATACT CTAGAATGGT TAAATTAGGA AGCATACTAA ATGAATGCCT CATATCATTA TTATAAAGAC CATATAGAAA 002560 002561 AATTAATTTA CATTATAATT GCAATTATAT TAAAATGATG GAAAATAAAA TTAACAGTTT GATTGCATGA CTTAGGAATA 002640 002641 ATGTACTTCT TTTAGCTAGA TATCTATTGA TATTTTAATG TTTCTGCAGT TGTTTTAGAA AGATAAAATG ATTAGGATTT 002720 002721 TAGTGGAGAT GAGCTCTATT TTTTCCCTGG AGTAAAATGT GCATATTCAT TCAGATAATT CATTCAAAAA TATTTCATGG 002800 002801 ATAAGATTGC TGTAGAGTAT TGAAATAGAG TAAGTAGTGT GATCAAAAGC GTAAGTGGga gagatggaca gagaaaggga 002880 002881 agatgttggt caaaaggtac aaagtttcag ttaaagagta ttaggttcta gctacgtatt acacagcaca gtaactagtt 002960 002961 aataatgtat atttcaaagt agcaattata aaagaaaatg cattttaaat gttaccacaa agaaatgata agtatctgag 003040 003041 gtgatggata tgttgattag cctgatttgg tcattccaca gtgtacatgt attgaaacat cacattatac cccataaata 003120 003121 tatacaatta ttatttgtca attagaaaca aGttaatttt ttaaataaaa ttaGGTTATT AAAGGCACAG TAAAAGCATA 003200 003201 GGGGAATAGT TTACATAGAC TAGATTTATT AGAGAAAGTA ATTGCAGGGA TGGAACAGAT GTAAAACTTA ATCGGGCCTG 003280 003281 GATTATGTGA CTACCTTGAG CTACCAAACC AATGAATTTA GGTTTTATCG GATAGTGAGG AGTGCTGACT GCCTTAAAAC 003360 003361 CTAATGCTTT AGGAAAGTTA GTCTGGAGAC TTTTTTCAGG GTGAATTGGC AAGTGAGCAG CCTCAGAGTC AGAGAAGTGC 003440 003441 AGCTTTCCAG ACTAAGTAAG AACCTGATAT AGAGGGCTAA CAGTGAGGGC GCAGTAGGGG AAGTGAAGGG AGAGAAGGGC 003520 003521 ATTGTCTATG CTTGAAAAGG TTAAAAAGTT AACTTTGATC TGCACTTTTC TCTCCTTAGT ATGCTCGAGA TTTCATCTTT 003600 003601 CAGCTGCATC TTCTGACCCT GTTAAAAAGG GAGTACTAAC AGTGGACTTC TCTGGAGTAC TAACAGTGGA CTTCTCTCCG 003680 003681 TAGGGTTATG ATAATTCAGA GAGCAGTGTT CGGAAAGCTT GTGTCTTCTG CCTGGTGGCT GTTCATGCGG TAATTGGTGA 003760 003761 TGAACTAAAA CCACATCTCA GTCAACTTAC TGGCAGTAAA ATGAAGCTAC TGAATCTTTA CATCAAACGT GCACAAACAG 003840 003841 GTTCTGGAGG AGCTGATCCC ACTACTGATG TTTCTGGACA AAGTTAGTGA AGCTCATCAC AGCGAACCAG GTCTCTCAAA 003920 003921 AGAAAGGACA GATAGACCAC CCTCATCAAT GAAAGGAAGT TCTCAAACAC ATCCTTTGGA ACTTACTATT GTTTCCCAGT 004000 004001 TTTAGTTTTT TGTTTCGTTT CGTTTTGTAT TTTCTGTAAC AGAGGACTAT CCTCAGTCTG CATGTAACTT TTATGATAGT 004080 004081 TATTCCAAAT TCAAGAAGAA GCAGTATTAA CATCAATTGA TCGACACAAA GTAATTTTTA ATTTAATTCA TCATTTCACA 004160 004161 TGTTTGTACT TTGTCTTCCC ATTAACCTTT GCCAGTGTTA TGATTGTATA AATTTTTTTA AATGCTGGTT AAACAGGAAT 004240 004241 GCTTAAAGCT TTAAAAGTTT AACAGTCTAA AACATTTTTG CTTTTATTCA ACTGCAGAAT AATATTTTTA TTGCTACTTT 004320 004321 GAGTTTTGTT TCGTATCATG TCCTATGCTA GAAATATTTA AATGATGTGA AACAAAGCAG GACTAATTTG AACTACAGCT 004400 004401 GGACTCCGTT TGTGTGATGG TGATACATGT CATTAGTTGC AACTTCTTTG GGGTGATCTA TAGTTTGAAA ACTAAAACCT 004480 004481 CAAAGACAGA TGTTACAGAA TCAGCCAGTT CTGTAAAACT GATATTGTCT ATTGGTTATT GATCTTGCCA TCTTTATTTA 004560 004561 AAACCATGTC CCTTCTATGA TCCCTTAAGA AAGCTGCACC AAATCATCTG CCTGTTTTTT CTTGATACTT ACTGAAATAG 004640 004641 AAGGTTTTAT TGCAGGGTTT ATTTTGGTTT GTTTATATCT TTGTTGTGAA TGATGCTTTT TTGTATTTAT TAATATCAAA 004720 004721 TTCACTTATG AATAAACTTG ATAATGGAAA CGGACAAAAA AAATCAAGTG CGTGTGTGTC CTTGACCGTC TTCTGTTTCT 004800 004801 CACGTAATAA ACAAATTATC GAGACATGGG AGTGACCAGC ACCTTTTCTT TAAATGGTGG AACCTGGTTT CCTTTTACCA 004880 004881 TGAAATTGTC TTACTTGAAA ATATTGATCC TGATGAGAGA GAAGATGGTG CCAAGGCTGT CTTTGTATAA TGGGCTCAAA 004960 004961 TTCTCTACCT CTTCAGGGCT AATACTTTTA ACTGAGCTGC TGCCTATAGT GTCTTTTGGA AAACTACTTA AAGGGTGATT 005040 005041 TTCTGTTACT TTTTAGCAAA TTTTTTTAAT CACCTCTTGC TACACCCATT CTTTTCATGT GCAGCCGACT CAAAAATTAC 005120 005121 CAGTTTTGGT GAAAGGCTAA ATTAGATAAT TTGGAACCAG GATACTAATG ATTTCTCATC TTTACTTTTT TTTAATCCTA 005200 005201 ATATAAAGTG AATTTGATTG AAAAGGCAAA TAGCTATTAG GGAAGCAGTT TGCCATTGTT GCAGAGTTAT CTGTACTTTG 005280 005281 TTTAACTGAA AAAAATGTAG AAATATATGT AAAGAATTTA AGACAAGAGT ACTGAATGGA TGATTTGTCA TAGGCTTTCC 005360 005361 CCTTTCTTTC TGTTCTAGCA GCAGGAAAAG TTTCTCTATA TCCTCTCCCT CTACCTGTAA CAATTTTGTT TTCTACTGTT 005440 005441 AATTACATTG TGTATTTATA GTTCTATGCT TACTGTTGTG CATATACTGG CAATAAAACT GTACATAACA TTACTTGAAA 005520 005521 AAGTTAATAA TGTATATCAG TTTTTCTGTC TCACTGTGTA ACAAGTCACT CAGTTTTATT TTAACTTTAG ACGGTCTTGT 005600 005601 ATCAGTGGTG GTCTCTTGAA TTTTGTAAGT TCATCTGAGG AGAAAAGATT TTTCAGGTGT AGCTACCACA ATCAAAGGTA 005680 005681 TATAGCTACA TACGCATGTA TATATTACAG CTTATCTGTA AGAAGAAAAT GCATTTTAAA CACAACTCTT CTCAGTAGCA 005760 005761 TTTTATGACC TTTGGATATG TTTGTAATCA TTTCGAATCA AAATATTGAT TTAATTTTGA CCTCTGGTTT AAGATACTGC 005840 005841 TTTAACTACT GTTGACAACC AAGTAGAGTG ACTTAAGCTG AACAGTAACT AACTGGAAAA TTAGATAAGC ACCTGGCATC 005920 005921 TAATGGCAGG CAGGCACTCA AGAAATGAAT TAACTACATA ATGGAAAAGT ATGGTTTAAT GTGTCCAAAT GAAAGCTAGT 006000 006001 AGATGTAAAC ATGGAAAAAT TGTGTTTACA ATTTTATAAT CTCAGTTGAT AAGACTATAA GAAAGCTGAT TATTTAAATC 006080 006081 ACTATATACA ATACACCCTT AATTTGTTCA TTCCAGAAAC ATACTGAGAT GTCAGCTACT TAAAAATGGT CACAAAAAGC 006160 006161 TACTGTTTAT ATTTTTCCTC CTGCTATTCT CTCCCAAATT AATTATTAAT AAGTGTTGTT CATTTACTGC ACTGCTGAGA 006240 006241 ACTAATTAAA ATTATATATT CCAGATTGTA AAA |
Predicted Small Protein
Name | NONHSAT088931_smProtein_2123:2386 |
Length | 88 |
Molecular weight | 9971.5674 |
Aromaticity | 0.114942528736 |
Instability index | 47.175862069 |
Isoelectric point | 9.07257080078 |
Runs | 13 |
Runs residual | 0.0111658456486 |
Runs probability | 0.0597611185847 |
Amino acid sequence | MNVHSSTIHSSQKVKTTQISINKWINNMIYHTMEYYPIINITFLFHSLPIIPHSAMRFPN CSGKGQCVSFWTLNIIYLACSCHIPGT |
Secondary structure | LLLLLEEEELLEEEEEEEEEHHHHHHHHHHHHLLLLLEEEEEEEELLLLLLLLLLLLLLL LLLLLEEEEEHHHHHHLHHHHLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLLLLL LLLLLLHHHHHHHHHHHHHHHHHHLLL |
PiMo | ooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTiiiiiiiii iiiiiiTTTTTTTTTTTTTTTTTTooo |