NONHSAT114756

From LncRNAWiki
Revision as of 21:08, 25 July 2014 by 124.16.129.48 (talk) (Created page with "Please input one-sentence summary here. ==Annotated Information== ===Transcriptomic Nomeclature=== Please input transcriptomic nomeclature information here. ===Functio...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT114756

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

2433 nt

Genomic location

chr6-:122757934..122760368

Exon number

1

Exons

122757934..122760368

Genome context

Sequence
000001 GAGGTTCTCT GTGAGGGCTC CATCTCTGCA GCAGGCTTCT GCCTGGTTAC TCAGGCTTTC TCATACATCC TCTGAAATCT 000080
000081 AGGTGGAGGT TGCCAAACCT CCTTCACCCT TGCACTCTCC ACACCTGCAG GCTTAACAAC ACGTGTTAGC CACCAAGGCT 000160
000161 TATGGCTTGT GCCCTGCACA AGTGGCACCC CATGCCTTAC TTGGGCCCTT TAGAGCTGAG CAGTGTCCCA AGGCTGGGCA 000240
000241 GCCCCTTCTC TATGGCTGCT TTTACATTTT TTTCTTTCAT TTCAACCTTG GAAAATCTTA TGCCTATGTG CCTCAGGTAT 000320
000321 GGTCTTCTTG TGAAGTATCT CCCAGGGCAT TTCCTCAGTT TGAATGTTGG CCATTCTAGT GAGGTTGGGG AAATTTCATG 000400
000401 AACAATATCC TGAAATATGT TTTCCACGTT GCTTGCTTTC TTCCCCTTTG GTTTCCTTTA CATAATCCCC TATTTCTTGG 000480
000481 AGGTTTTGTT CATTCTTTTT GTTTTAGTTC AGTGAGCCAA TCTTTGAGCT CTGAGATTCT TTTCTCAGCT TGGTCTATTC 000560
000561 TGCTGGTAAT ACTCGTGATT GCATTATGAA ATTCTTGTAG TGTCTTTTTC AGCTCTATCA GATCAGTTTG GTTCTTTCTT 000640
000641 ATAATGCCCA TTTCATCTAT CAGCTTCTGT ATCATTTTAT TGTAATCCTT AGATTTCTTG GATTGGGTTT TGACTTTTCT 000720
000721 CCTGAATCTC GATGATTTTT GTTCCTATCC ATATTCTGAA TTCTACTTCT GTCATTTCAG CCATTTCAGC CTGGTTAAGA 000800
000801 ACCCTTGCTG GGGCACTAGG GTGGTTGTTT GGAGGAAGAG ACTCTGGCTT TTCAAGTAGC TATATAGCAA TGCTCCACTC 000880
000881 CTCAGTACCA ATTTTCTGTG GCAGGCCATC CTTATATTGC AAAAAATACC TGAGGCTGGG TAATATATAA AGAGGCTTAA 000960
000961 TTGGCTTATG GTTCTATAGG CTGTACAAGC AGCACAGTCC CAGGCATCTG CTCAGCTTCC GGTGAGGCCT CGGAAAGCTT 001040
001041 ACAATCATGG CGGAAGGCAA AGGAACCCGA TGTCTCACAT AGTGAGAATC AAGAGTAAGA GAGAGTGAAG GAAGAAGCCA 001120
001121 TATACTTGTA AACAGGCAAA CCTCATGAGC ACGCACCATC ACAAGGACAG CATCAAGTGG ATGGGGCTAA ACCATTCATG 001200
001201 AGAAATCTGC ACCAATGATG CAGTCACCTC CTACCAGGTT CCACCTCCAG CACTGGAAAT TACAATTCAA CAAGAGAGTT 001280
001281 AGAGGGGTCA ACTTCCAAAC TATATCATTC TCCCTGCAGT TCTATCAGTT TTTGCCTCAT GTATCCTGAT CCTCTGTTCT 001360
001361 TGGGTGCATA CATGTTAAGG ATAGTCATGT CTTCTTGGAG AATGGACCCC TTTCATCATT ATCCCTGATA GTAATTCTTG 001440
001441 CTGTATAGTC TGCTATTCTA TAATATACCT ATTTCTTCAT TTTGGTTAGT GTTAGCCTGG CATATTTTTC TCTCTTTAAT 001520
001521 TTGTATGTCT CTTTACATTT CAAGTGGGTT GCTTGTAACC AACATATAAT TGGGTTTTGT TCTTTGATCC TGCTTTGACA 001600
001601 ATTTTTTCTT TTTTAAACTG GCCCAGTTTT TCCATATAAT AATCTATCTT TTAATTGGTA CATTTACACC CTTGACATTC 001680
001681 AAAGTATTTA TATATTTGGA TAAACATCTA CCATAATGTT ACTGTTTTCT ATTTGTTAAC CTTGTTCTTT ATTCCTATTT 001760
001761 TTGTCTTCCA TTCGTCTTGT GCCTTTGATG GTGTTAATTT GGCATTTTAT TATTCTCTCT TCTAGCGTGG TTTTCTTGTG 001840
001841 GTTGCCCTTG TGTTTGCAGT ATAGATTTAC AAATAATGCA ACCCCTCTTT CAAATAATAA TATACTGCTT CTTGGGCAGT 001920
001921 GTACCTTATA GTAACAAAAT AATCCTAATT TCTCTTTCCT ATCCCATGTA TCATTGCTGT CATTCCACTT ACATATAAGC 002000
002001 ACCCCTAAGT ATGACGACTA TACACACACA CACACACACA CACACACAAA TATATGTGTA CAAAATCAAA TACATTGTTG 002080
002081 CCATTATTTT GAATGAACTG TTAACTGTTA GATTAAGAAT TGGTACCATA TGGAACAGGT TAGTGGAACT TACTATAAAA 002160
002161 GGCTTTTCTT TGGGGGAAAT TTTTAATTAC TGAAACTATT TAGGAGCTGT GGGATTACAT GTCTATCTTC AATTAGTTTG 002240
002241 AGTAAAATAC TCGTAGTAAT TTGTGTATTT TGTCAGTTTT CAAATGAATT GTTCATAATA TCCTCACATT TTCAAATTTC 002320
002321 AACTGCGTTT ATAAAATTTT CATTTTTCCA TTCTCTATTT GTGTCTTCTT GCTCGATCTT ACCAAAATAT TTTGTTTTAG 002400
002401 TGCTTTTTCA ATAAACAAGT TCTGGCTTAT TTT
[back to top]

Predicted Small Protein

Name NONHSAT114756_smProtein_161:400
Length 80
Molecular weight 8774.2824
Aromaticity 0.126582278481
Instability index 54.7063291139
Isoelectric point 6.88787841797
Runs 11
Runs residual 0.00104040228889
Runs probability 0.0396251866841
Amino acid sequence MACALHKWHPMPYLGPLELSSVPRLGSPFSMAAFTFFSFISTLENLMPMCLRYGLLVKYL
PGHFLSLNVGHSSEVGEIS
Secondary structure LLHHHHHLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHLHHHHHL
LLLEEEELLLLLLLLLEEL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLL
LLLLLLLLLLLLLLLLLLL
PiMo oooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTTTiiiiiiiiii
iiiiiiiiiiiiiiiiiii