ENST00000313156.3
Revision as of 14:40, 16 October 2014 by 124.16.129.48 (talk)
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
ENST00000313156.3 |
Source |
Gencode19 |
Same with |
lnc-CHST12-1:1 |
Classification |
intergenic |
Length |
2067 nt |
Genomic location |
chr7+:2477398..2487485 |
Exon number |
2 |
Exons |
2477398..2477555,2485577..2487485 |
Genome context |
|
Sequence |
000001 CACACACACA TCGGGATATT TTTCTTGTTT CCTTCTTCCA GAGGGTGTAG GAGTTGTGTT CCAAGTTTGT TCCTGCAAAC 000080
000081 CCTCCGATGA GGCCAGCTGC ATTCATCGGG GCCTGGATGG CCGCACCTCT CTCTCCCCGC CCTGTCTCCT GCACTCAGTC 000160 000161 TCATTTCCAG ATGGGGAAAG GGAGACCCAG GCTGCGGTGA CCCACTGAGG CACAGGATCA GTGAGAACCC AGCCCTGGCT 000240 000241 TTGCCCAGAC CTCTCAAGGG CACTTCGTGG GACCATTGCC GGCCGTTGTG GCATCTGTCC CTGGCCTTGC CCCCATCCGT 000320 000321 CTCTGCACAG CCCAGGTGGG TCCGAGCCAG CCCCAGGTCT CCAGGGTCCC AGCCCAGCCT CTAGAAGAGC CAGCAGCAGG 000400 000401 GCTGGAAGGG AGAGCACATG CTGGGCCTTG GGGCTGCCTT GGACCTCAGG CCGTTGACAA GGAAAAGCGG AGAGTTGGGA 000480 000481 AAAAAGGACA AATAGCTGAG CGCCAGCCGC AGTCTGGGGG ACGGGAGCCT CGTGCGACTC TCGGAGTGCT GGCCAGATTG 000560 000561 GCAGAGGGGA GGAGAGAGGA AAAACCCAGG CTCTGAGGAA AAACCTCTCC AGCCCAGCGC GTGGCCTGGC ATTAACCCAC 000640 000641 TGCAGCCCCA GGAAGTGGTT CCACCCCAGG CAGCCAACAA GGCGGTGCCT GAACTATGTC TGTGGATGAC GGAGCCACGA 000720 000721 CCTGTCCCTC AGGGCTCAGC GCTGCGGCTA TGTCCAGGGA CCCCTGGCTG TGCCCACGTC GGGGCTTCCC GTTCCTTACC 000800 000801 TGCCATGAGA ATGAGATGTC CAGGGACCTC CCTGCTCCAG CTGGGACCTG TGGGGCTTTG TCTGTTGTCC CGAGCACCTT 000880 000881 GGAGATGTCA TTTCTAACAT TTTAACCCAG GAATCCCCCC ACCAAGGGAC AGAGTGCAAG GACATGATCG AACAGAAAAA 000960 000961 GTTCTGGTAC AAGATCAACC CCGTGGGGTG GTGAGTGCTG CAGCCCCGGG CCTCACATCC TGCCGTCCCT GTGGGAGATT 001040 001041 GGAGCGGTCC CAGTGCCCAC CGCTGATTCT CTGGCTCCAG CAACCCCTCC AGGTGGATCC GTCCCACGCA GCCTGGCCTG 001120 001121 AAACACTGCC CAGCCACTGG GTCCAGTAAG ACAGAGCCTC GAGTCATTCT GCCAAGAGGA TCCAGAAACA CAGACTTTTT 001200 001201 CTGGGGTCCT GGAGGCTTCT GGCCCATGGG GAGCCCCTGG GTCCCAGCGA TCCAGCCCTG ATGTGCTGAG GGTGCAGGGC 001280 001281 CCAGCTGCAG AGCAGAGGAG AGTGGCCCCC AGGGACCAGC AGCACGAAAG GCACACTGAG GCACACTGGC AGGCCTGGGC 001360 001361 TGCAGAGAGC CTGAAGGTCA TGGGGTAGCT GGTGGAAGCA GGAAGACCCC ATACAGCAGC GACCACTGAG GCTGGTGCTG 001440 001441 CACTTTCTCA GGGAATTGAG TGTGGGCTCC CACCATCCCG GCCACTGGCT TCCTCCAAAG CCTCCTCCTC TTACATCAGC 001520 001521 AAACCTTCTG TTCGGTGACC CCCTCAGTGA CCCTCTGTGC TTGCCTTCGT GGTCTTCCTC ATGGAGGATT TCGGGTCAGC 001600 001601 GTGGGGGTCA GAGGTCATTT CCCATACCCC CTCAAAGGTA CTTCTTGCTG TGGTCCCCAC ACTCTGACAC CCTCTTCTGA 001680 001681 AATGAACACT TTTTTGTTGT TGTTGTTGAG ACAGAGTCTT GCTCTGTCGC CCAGGCTGGA GTGCAGTGGC ACAATCTTAG 001760 001761 CTCACTGCAA CCTCCACCTC CCAGGTTCAA GCGATTTTCA TGCCTCAGCT TCCCGAGTAG CTGGGATTAC AGGCATGTGC 001840 001841 CACCAAGCCC AGCTAATTTT TGTATTTTTA GTAGAGATGA GGTTTCACCA TGTTGGCCAG GCTGGTCTCG AACTTCTGAC 001920 001921 CTCAAGTGAT TCGCCCGCCT CGGCCTCCCA AAGTGCTGGG ATTACAAGCA TGAGCCACTG CGCCCGGCCA CAAACACTTT 002000 002001 TTTTTTTTTA AACAAGTGAA AACAAGTTTA TTAACAAAGT TAAGAAATAA AGAATGGCTA TTCCATA |
Predicted Small Protein
Name | ENST00000313156.3_smProtein_695:904 |
Length | 70 |
Molecular weight | 7309.2985 |
Aromaticity | 0.0724637681159 |
Instability index | 79.6072463768 |
Isoelectric point | 4.64642333984 |
Runs | 9 |
Runs residual | 0.0088965418281 |
Runs probability | 0.0360360360361 |
Amino acid sequence | MSVDDGATTCPSGLSAAAMSRDPWLCPRRGFPFLTCHENEMSRDLPAPAGTCGALSVVPS TLEMSFLTF |
Secondary structure | LLLLLLLLLLLLHHHHHHLLLLLLLLLLLLLLEELLLLLLLLLLLLLLLLLLLEEEEELL LLEEEEEEL |
PRMN | - |
PiMo | - |