ENST00000468859.1
Revision as of 16:21, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000468859.1 |
Source |
Gencode19 |
Same with |
lnc-ALG1L-2:1 |
Classification |
intergenic |
Length |
1996 nt |
Genomic location |
chr3-:125581417..125606178 |
Exon number |
2 |
Exons |
125581417..125581956,125604723..125606178 |
Genome context |
|
Sequence |
000001 TAGTTACTGA TTCTAGGGAA CAATTGGGTA GAAAGAGATG GACTCCCTGT GTTTGAAATT CAGAACTCAA GCTTGGCTCT 000080
000081 AAGTGTTTCC TTGCTTTGCT GTGCTCCAGG GGAGTCCTTG AGCAGAAGGA AGCAAGTTGC CTGAGATTCT TCAAAGCCCG 000160 000161 CAGCCCTTTT GGAGGTTAGA TGGTTATTCT CAGAGCCTTT ATGATGCATA ATAAAGACCT AGCTTGGACC AATATTAGGA 000240 000241 TGAGTTATCT TGCTATTAAC ATTCTTTTAG GTAGAAGTTG CTGGTCCCAT CTTGCTCACA ATCCTCCAAA GTTTGAAAGT 000320 000321 TATTTTCCAG GAGACTTGGC TTGCACTGAG AGCTGCCCTC CCACCCTCTC TCCAAATTTC CTCTTGGGGG TAGCCTAACA 000400 000401 AGGTGCTGTC ACAGACCCTT GTCGGCCACG ATGACCCCAC CCAGACCATC CCTCTGCTGT TTCACTCTTT GATAGTCTCT 000480 000481 GGAGCTCTCT GGGGAGGGGT GAGACCTGCC GTCTAGTTTG TATGGTTTGC CCAGGTCTTA CAGTCATGGC TGGCTGCCTC 000560 000561 TCTCTGAGAA CTAGAACTCC TGAACTTGGT GAAAGACCTC AGCCATCGAT CATGTTGAAT TATCGGGGAC ACTCATTTGA 000640 000641 AATCCGAGCC TGTTCCAGAT AGACTCTCTC TCTTTCTGCC CTGACCGTGA GAGAAGCCCT GCTGGACGGT GGAGACACTC 000720 000721 GTGGGCTGTG AGCAAGGGAT GCAAAGGCTG CCGGGAATCC CATCTTTCCA GCATCATCTG CCAAGGCACA TTAGTTCCTG 000800 000801 GGTATCTGGA TGGGTTCTAG CAGCATTACT GTCATTGAAG GAAAAATTTT AGCCATATTA AAGGTTAATG CAGCAATCTC 000880 000881 CACATAGGCT GCCTGGAAGG GAAGCAGGAC AAGGTTAGGT TTTCCTTGTG ATGGACAGGA GGCAGGCGGC CCTCCCACAG 000960 000961 CCCTGCCTGG CAATACAGAT GTGTCCCCAA AAGGCACTGG GGGCCAGCTG GAGTGCTATG CCGAGGCGGA CTGACCCGGG 001040 001041 CCGTGGGTTC ACTCTGCTGG CAGCGGTTTC CCGCCAGCTC CTTGCAGAGT TGGCAGATGG CCCAGCCCCA CAGCAGGAGC 001120 001121 CGGGAATGGC AGAACGAGAC ACAACAATTT GATATCCACT TGCCAGATGA GCCGGGTGTC ATCAGTCGCC TGGCTCTATG 001200 001201 CCCAACCTCT TTTTGCATAA ACACTTATGG ATTCAGCCAA GAGGAAAAGC ACTCTGATTA TGAATTGAGC AGAAGGAAAC 001280 001281 AAAGTTCTGC AGATAAACAC CAATGAAACA AAAAACCACG AATAAGAAAA ATGACAGAAA AGGAGAACCT TCCCAGAATC 001360 001361 CTCCTGCCAG TGAACGGTCA CCAGAGCAAG AGCATGGAGT CCCTGGGTTT TGAACTGTGA GATAAGGAAG ATGATGAAAA 001440 001441 CCTCCCTAGC AGCCAGTTCT ACAGGGCCTG GAGCTGATAC GAAAAACCTC CCTTCTTTCC CAAATGGTCC CCAGCTTCCC 001520 001521 CGTTCACTGA AGGCCCTGCA GTCGGGAACA GTCAGGACTT TGCACCCAGT TGTTGTGGGT GTTTGGCCAA CCCTTCCTCT 001600 001601 TGTGTGATTC ATGGACCTGC AGCATTGCGT CACCTGTGAG CTTTTGGAAT TGAAGACTCT CAGGGCTCAC CCGGGAGGAC 001680 001681 CTGCTGGGCC AGAATCTGCA TTTTAACAAG ATGCCTGGGT GATCTGCATA CACGTTCAGA TCTGAGAAGT GCTGGTAGGA 001760 001761 GAGGCTTTAA GGTGGTAATT AGATCTTTTC TCCACCTACA AGAATCTTAG TTTCTTCATG TTAAATCTAT TAACTGTGGC 001840 001841 AATGGCATGG GGGTTATAAA ACAAAACAAA ACAAAACCCT TACATCAAGA ATGCACCCTG GTGTGTTATG GATGTGGGTG 001920 001921 AAATGAAATG TCTGGAATTT GCTTTAAAAT ATTGTAAAAT AGCAAGAAGG AAAAGAAAAG CGGGAACTGG AATGAG |
Predicted Small Protein
Name | ENST00000468859.1_smProtein_179:397 |
Length | 73 |
Molecular weight | 8123.4812 |
Aromaticity | 0.111111111111 |
Instability index | 99.6805555556 |
Isoelectric point | 7.77496337891 |
Runs | 8 |
Runs residual | 0.0298053527981 |
Runs probability | 0.0377031443208 |
Amino acid sequence | MVILRAFMMHNKDLAWTNIRMSYLAINILLGRSCWSHLAHNPPKFESYFPGDLACTESCP PTLSPNFLLGVA |
Secondary structure | LEEHHHHHHHLLLHHHHHHHHHHHHHHHHHLLLHHHHHLLLLLLLLLLLLLLLLLLLLLL LLLLLLLLLLLL |
PRMN | - |
PiMo | - |