NONHSAT005499
Revision as of 19:37, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT005499 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
4965 nt |
Genomic location |
chr1-:118379076..118400566 |
Exon number |
9 |
Exons |
118379076..118379412,118379519..118379599,118379628..118380383,118381198..118381221,118381315..118381982,118382950..118383734,118383875..118384552,118388861..118389491,118399551..118400566 |
Genome context |
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Sequence |
000001 AAAGCACAAT AAGATTATGT ATGCCAATAT TCTAAAACAA ACAGGATGGA GGAGCATCTA GACATTCTTT ACTGAATCTT 000080
000081 GTAATAATCT TACTACTCAA AGGAAGGTCT GTGGATCAGG AACATTGACA TGTTAGGAAT ATAGACTCTC AGCCCCCACC 000160 000161 CCAGCACTAC AGAATCCGAT TTCATTTTAT CAAGATGCCC CAGGCAATTT ACATCTACAT CAAGGTTTAA GAGTCCTTGT 000240 000241 AATCCTGGCT CTGGCATTTA CTAGCAGTGT GATGTTAGAT TGCATAATCT CTGTGTCCAC TTTGTCAACT GTAAAATAGA 000320 000321 GGGTGGAGTA CAGGAAGACA GGGTGCATGT AATTGGATAT TGGGATATCT CTAGAGATAA GGTACACAAA TGTTAAATAA 000400 000401 CACCTCTTGC TTAGTAAGCA TTGGTTATTT TCACGTGCTA AGTACTTTCA AAAACAACTG TAAGGGGATA CAGCTTTCAA 000480 000481 ATTCTCTTAA GTATTTGAAC TCATCGTCTT TAAACCCTTA CCCTTATTTA TGTCATATTA AGGGTTTTTA GCCTATTGAA 000560 000561 ATGTTGGGGA GGGTTTTTAT TCATCTGGTT TAGTCTTTCT TCCTTAGAGA TGAGTAAGCA CAGGAAAAAT AAGCATTTCC 000640 000641 AAAGTCAGCA AATAGTGTTT GTCCTAATAA GCCCTAATAT AGACAAATGG CCATAACTTC AATCAATGAA TTATCAAGTT 000720 000721 ATAAACTTAA AAATATACAC AGAAACAATC TAGTAATTTG TCGAACCTTG AAGGACACTG ACTGCTTAAT GGACTTTAGT 000800 000801 CATAATATGT TGTAACCCTA GATTAACTGA AATGGGTGAA ATGGATATGT ATATATAGAA TAAGTTTGTG CAAAGAGAAG 000880 000881 ATAACCTGGT TTTCAACTTC TTTGAAAACA TGTTTTAGTA TAATCTTTGT GCATCGTTTA GTAAGTATAA TATATTCTAT 000960 000961 TAAGTTTCAT GTTTGTCTTA TGTAATGATT TGGAAAGCAC ATCCAGGTCT TTCAGTAAAA TTCTAGTGAG GTGTGACCTT 001040 001041 GCAAAGATTT TTCCAGAGTA TTTCTGGAGG ATGCCGAACT TGAGTGAATT GTTAACATGT CTAACAGTAT TCCTGTGGTC 001120 001121 ACTCCTGAAT TGGATTTTTA ACTATGTTAG CTCCAGATGC GAAGAAAGTA TATAATAATA GAAAATGACT GTTCTCCATC 001200 001201 TTTTAAACAG AAAATTTTGT TAATAAAAAT TTCTTCAGGC CATCTCACTA CATGGTCCCC GAAGCACTTT CTCCTGAGTA 001280 001281 AACCAATAGG CTCTGACTCT TTCTCAACCT CTTATGATAA AAACTGTTTT GATGTACTGT TGGATTCAGT TTGCCAGTAT 001360 001361 TTTGTTGAGG ATTTTGTATC GATGTTCATA AAGGATATTG GCCTGAAGTT TTCTTCTTTT ATGTGTCTCT GCCAGGTTTT 001440 001441 AATATCAGGA TGATGCTGGC CTCATAGAAT GAGTTAGGGA GGAGTCCCTC TTCCTCAATT TTTTGGAATA GTTTCAGCAG 001520 001521 GAATGGTACC AGCTCTTCTT TGTACATCTG GTAGAATTCA GCTGTGTATC TATCTGGTTC TGGGTTTTAT GTTTAGTAAG 001600 001601 CTATTTATTA CTGACTCAGT TTCAGAGCTC ATTATTGGTC TGTGAAAACT GAATTTAACC CAAAGCTGCT TCATCTCTTT 001680 001681 GAATTTATAC TGTTCCTTTG AGTATCCTTA AAGTCCCATT ATAAGCACTA CCTTCCATAA AGCTTTGCCC AGTTCTTCTA 001760 001761 ACCTCATTGA TCTGCCTCTG CTGCTCTGCT CTGAACTTAA TCCCTATTTT TAGGCCCTTA TCCTTAACCT TGCAGAAGAG 001840 001841 TCGCTTGTGT TCCTGTCTTG GGTCCCCCTA TGTTTCCACA GGCAGAAAAC TGCATGCCTT ATCCATTCCT CCACTCCCTA 001920 001921 TGGTGCTTAG CTTGGCATCT TCCTAACACA GGCTAGATGG GCTGTGTCTG TTGCCGCATA TGCACATTGT GAAGCAATAT 002000 002001 GTCATAGACC TCCAAGATAA CTAGTATCAT CTCTTCATTT TAACATGAGA AAACTGAGAT GTACAAAGGC ACTCAAAGGT 002080 002081 GCAAACTCAA GGTCATTGGT GAGATGGTGG CAGAGCTAGG TCACGTGACT CCCTGTAAAT TACCACCTTC TAAAATGTAG 002160 002161 AGGGAAATAT GATGTCATGG GAGAGTATTT TGTGGTCATG AAATAGTATG GATTGCCTAT ATCCTGATGG AAATAATACA 002240 002241 GCAGAGGGGA AAATCGATGA TGCAATGATT GTAAGAGGGA AGTTATCAAG TAGGTAAAAG GGGGAAAAAT CCAGTACACA 002320 002321 ATGAATAAGA AGTATGGTTT ACAGATAAAA ATGGTTTATG GGTAAAAATG AGGAGGAGGC AGAAGACATT GTAGGTTTGA 002400 002401 AGAGAGAAGA GATAAAAGTT TTTCTAGGAG AGTGGGAAAG GGAATTGATG AGGGAATCAT AGTATGATTT CAGGCAGCTG 002480 002481 TGACCATTAA GGTTTGTGGT CAAACAATGT TTTTCAGTGG AGATGCTGTC AGTGTTTCAG GCAGGCATCT TCCTTGGCAT 002560 002561 TTAGCATCCC TGGCCCTTGG TAGTACCCCT CAATCATTGT GCTGATCAAA ATGTTCTCTG CCCCACTTCC AAACACTGCC 002640 002641 CAGGGAACTG AACCTTTCCT GGTTGAGGAC CACAGAGAGA CCAATCACAA AGTTGCATAG TTTTCTTCAG TCACATTCAG 002720 002721 ATGTTGGCAG GGACTATGCA AAATCTGGGT TTATGAGTGT TAGGGTTAGA CAGAAAAGGA CAGTGAAAAT AGACAGAGTC 002800 002801 AAAGGAATTG AAAGTGTATG TAATGCAGTA ATTATAACAG ATTTTATGAA CAACAAAATA CCTCTGCTGG CCTGAGGCAA 002880 002881 TCAGGACACC ACAGTGGGAA GGGAATTCCT GGCTACCATT GATGAACATT TGGACATGTG TCCAATTTGG CTATTATTAA 002960 002961 TAAAGCTTAT ATGAATATTT TACACATATC TTTGGGTCGA CATATGCATT TATTTCTGTT AGTAATATAC ACAGAGAAAT 003040 003041 AGAGTTCTCT TGGGACTTGC TTGATCAAAG GGAATACGTA TCTTTAGCTT TATTTAAAAT TGCGAACTAT TTTAAATTCC 003120 003121 TGTCAGCAAT GTGTGAGAAT TCTAGTTGTC TACCACATCT TTACCAAAAA TTGATCTTAA TTAGTGCCTT TAATTTAACC 003200 003201 ATTTGGTTGT AGTGTAGTGG TGTCGCATTG TGGTTTTCAT TTGTATTTTT CTGATGTCTA ATGATATAAA CTTCCTTTTT 003280 003281 CATATGCTTA TGAGTCATTT GAAAACACTC TTTTGTTGTG TGTCTATTTC CAGTATTTCT CCCTTTTTAT TGAATTCCTT 003360 003361 AAATTTGTAG TTCTGACTAA GTCCCTTGTC ATATGTATTA CCTATCTTCC AAAAATCTTC TCACAGTCTG TGGCTTGCCG 003440 003441 TTTCACTCTA TTGTCTTTGT TGAATAGTTC TTAATGAAAT CCAATTTATT ACGCTTTTCT CTTTAGCACT TTATATATCT 003520 003521 TGTTTAAAAT GTTTTAACCT ATCTAAAATA ATGAAGATTT TTTTTTTCTA GAAGTTTCAT TGTTTTAGTT TTCATATGTA 003600 003601 AGCTATCACA ATTTTTATTT TGGTGTGATG TGAAGTAGAG GATTAATGCT TCTTTTTATT TTAATGGATT CCAATTGACA 003680 003681 CAATACTGTT CAATGAGAAG ACTGGTCCTC TTGCACTCAA TTGCAATGGC ACCCTTGTCA CAAATCAAGT GACCAAATGA 003760 003761 AAACCATTTC CCTTTATATG CTCTGAAACA TCTGCAAAAA CTTAAAAACC TGGCTTATCC CCTCCCCTAG TCTCCAGCCT 003840 003841 CTTGCTGTTA CCTCCCGATT CCTGAATCTA CCAGAAGCCA GCTGACATTG GAGCCTCGGA AGCATGCCCT GCAAGGGCCA 003920 003921 GCCTCAGGAG GATAATGCCT AGAAGGGGAA GGTTACAGAG TGATCTAGGG GCAGAAGGCC CAGGACTAGT ACCCTATCTG 004000 004001 ACCCAGACCC TTTCTCTGGA GTTAGTAATT GGTTTTTCTT CTAATTCTTG AGTCAGTTTT GGTTATCTCT ATTTTCCAAG 004080 004081 AAAATCATCT ATTTTACTGA GGTTTTTAAA TTAGTGTAAA ATTATATTTT ATCATGTAAA ATCTCCGTGT TTATAGTTAA 004160 004161 TTTCTTCTTC TTATTCTAAT TTTGTGTATG CATAAGCTTA AATATTTTTC TGCATTTGTG ACAATTGCCT AGGGACAGGC 004240 004241 AATTTTATTT AACATGTTCC TCTGACCCTT GTCCATTCTT TGATTAATAA ATAGGTCTAG AAGCTGATCC AATTCAGGAT 004320 004321 CAGTTATTTT GGCATAAGTC CTTCACAGGC AGTATGTACT TCCATCAGGG GCCATGTAAA CATAAATGTC CTTTTTGATG 004400 004401 TTAATAGCTA TTGTTGACTA TTGCCTAGAT ACATTAGGAG TTGCAAATGC TGAAAAACTA ATTTTATCAT TCTTTATTTG 004480 004481 TTTATCAACT GGAACAATTC TTTAAAGAGA AGCTATCCCT CATCACTATT TGATCACTCT TAACTGTCTG TACTTTTCCT 004560 004561 TTATACCTGA CTTCCTTTAC CAAAATAATA ATCTTTTCTC TAATACAGAC CCCAGAATTT TTGCAGAGAC TCAGTTCTCT 004640 004641 CTTTGGAGGC AACCACTGTT ACAAATTTCT TATGGTAGTT TCCAGAGATA TCAAAACTAT ATATTCAAAT GATAAAGCAA 004720 004721 ATGGGTTAAA ATGACAATAA TGAGTGAATC TGGGTAACAG GTGTATAAGT GTTCTTTATA TTGTTTTATT TGTACAACTT 004800 004801 TTGTAAGTTT TAAAGTATTT CTAAGTAAAC AGTAATATGC ACATTAAATA ATATATATTA TATATATACT TTTTGTTTAG 004880 004881 TAACTCAAAT GATACTAACT GTACACGCCG TCCTGCCCCT TGCTTTTCTC ATTAAACCAT ATTATCTTGA AGATCTGTCC 004960 004961 ATTAG |
Predicted Small Protein
Name | NONHSAT005499_smProtein_968:1174 |
Length | 69 |
Molecular weight | 8120.4441 |
Aromaticity | 0.161764705882 |
Instability index | 57.9102941176 |
Isoelectric point | 5.14447021484 |
Runs | 9 |
Runs residual | 0.00814785373609 |
Runs probability | 0.0516595026398 |
Amino acid sequence | MFVLCNDLESTSRSFSKILVRCDLAKIFPEYFWRMPNLSELLTCLTVFLWSLLNWIFNYV SSRCEESI |
Secondary structure | LEEEELLLLLLLHHHHHHHHHLHHHHHHHHHHHHLLLHHHHHHHHHHHHHHHHHHHHHHH HHLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLL LLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooo oooooooo |