NONHSAT008489
Revision as of 19:49, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT008489 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3528 nt |
Genomic location |
chr1-:189958700..189962227 |
Exon number |
1 |
Exons |
189958700..189962227 |
Genome context |
|
Sequence |
000001 GGCGGCAAGG ACAAGAAACA CATGGCTCTG GTGACCACGG TGGTCCGGTG GTCCGGGCCG CCATGTCTGC TTTCAGAGCC 000080
000081 AAATCAACCA CTGGGGCTGG AACTGCCCAG GAGGCCCAAA ACAAAAAGCC GGTGTCCAGG CCTCCCTCCC GACACCGCTG 000160 000161 CAAGCACCAG GGAGCCCTGA GTCAAGCAAG GCCCCAAAAT TTATAGTTTT AATTCTACAA ATGATTCTGG TTGTCCTGCA 000240 000241 AGTCTGGGTA AATCTATGTT GAAAGTGGTA ATTAATAACA AATTAGAGCA AGGAATTATG GGAGTGAGCA ATGACAAGCA 000320 000321 AAACAATGAC AAGGGAGTGA TTTCTGGAAG ACTTAATGCC AAAAAATTGC AGGATTTTTA CACAGCTTTA CAAGCATTTT 000400 000401 TATTTAAGAC TAAGACATTG AAGATGTCAC GACCAATGCT CTCTTACATG GAGGTGACCT TCATTCTGCC TTGGATTGGC 000480 000481 TCTGTTTAAA CCTTGCAAAT GATGCACTGA AAGATTCAGT TAAGAATTTG AAGGGCAACA ACCTAAAAGT AGGCTGAAAT 000560 000561 TGCAGTCTCC TATACAAAGC ACTATTTCAC CTCCATTGCA ACCTAAAACA AAACAAACAA ACAAAAGAAT AAGACCCTAA 000640 000641 GATGAAGCCA AAAAAGGAAG AAGGAAATAT GGAAGCAAAT ATGAAAGAGT GGATTTCACA GTACACTAAA CAACAAATGA 000720 000721 AGAAGAAAAG AATGAGAATT CTAAAAGTTT AGAAGAATAG GAAAAAAAAA ATTGACCCCA ACGAAAGTTA TTTACATCTT 000800 000801 GCAGCAAAAC TGCTAGATGC AAAGGAGCCA GCAGCTGCCT TTAAACTGGa aaaaaaaaaa aaacaaaaaa aaaaaaaaaa 000880 000881 accaaaaaaa aaaaaaaaaa aaaCCAGGCA AGACCAAAAG GAGGCTCAGG AAAAAATAAG GAAATTTCAA AGAGAAATTG 000960 000961 AAACTTTAGA AGATGATCCA GTATTTAATC CAGCCATAAA GATTTCACAT CAACAAAATG AAAGAAAAAA AGCCTCCTGT 001040 001041 GGCCATAGAA GGAGAAAGTG CATTGAACTT TTCAGTTATT TGAAAAATCT GCAGCTGCTA CTGAAGAAGA GAAAGATAAA 001120 001121 AAGAACCTCA TGATGTAAGA AATTTTGACT GTACTGCTCA ACGCTGAACT GGAAAATCTC CCAAACAATT TCTGATTGAC 001200 001201 TGGTTCAGGA AGACTCTTCC CAAAAGTCGA AATCCTTCCT TTGAAAAAGT TCCAGTAGGT AGATGCTGGA AATGTAGGGT 001280 001281 TAGGGTAATC AAGTCTGAAG ATGCTGTCCT GGTAGGTTGC CTACAATCTT AACAGAGGAT GGCATGCAAG CTCAGCACCT 001360 001361 GGGAGGCACT TTAGTTCTTT ATCATTTAGT TAAAGGGCAG TCAGTTTATC AGTGACTTCA TCCTACTTCC CAAGATGTTT 001440 001441 GGCTGGAGTA CAGTGATGAG GAAAAGAAAA GAGAAGAATT AAATAAAATG AAAACCAATA AACCATGTGA TCTTTTTATT 001520 001521 GCCCAACTTT TGAATATATT GAAACAGCAG CGACAACAAC ATTCTGAAAA TAAGAGAGAA ATCTCTAATA ATCCTGAGGA 001600 001601 ATCTTGGGAA AATTTAGTTT CTGATGAGGA TTTTTCTGCA CTGTCCTTGG TATCAGCAAA TGCGGAAGAT TTGGAACATG 001680 001681 TTAGAAACCT CTTTAGAAAG TTGCAAAGCA CACCTAAGTC TTAGAGACTT CTAAAGGAAA GACAGCAGTT TCCTGTATTT 001760 001761 AAACATCTGG ATGCAGGTGT AGAAACTCTT AAAGGCACTG GGGAGTGGTT GTGGCAGGTA AAACCAGGAG TGATGAAAGT 001840 001841 ACTCAGGTAC CACATTTTCT GTTGGAAGAT TTGCTTCTAA ATGAGTGGGG AGCAAGTAAA TGTAACATTG CCTATACCTA 001920 001921 ACCTCAAAGG ATCTCAGCAG TGAGTTTAGC CACCAGAGTG TGTGATGAAT TGGGCTGTGA AAATGGAACT GGAGGAAGGA 002000 002001 ATTCTTTGTG TGGATATCAG ATCTGGATGT TATCTGAAGC TTGTGAATCT ACCAGTGTAC TCTACTGTAC AACAGGGGTT 002080 002081 TTGTCAAGGA AACTTCAAGA AGATGGTCTT TTTACTAATG TGTCTCACAT TATTGCAAAT GAGGTTCGTA CAAGAAGTGT 002160 002161 CCAGTCAGAC TTCCTACTAA CTGTCTTAAA GGAAGTTTTA CAAAAACATT CTGATCTCTA CTTGATTCTA TGAGTGCCGC 002240 002241 TGTGGACAGT GAAAAATTTT CCACATATTT CACACACTGC CCCACTCTCA GGATTTCAGG AAGAAGTTAT TCTGCTGAGG 002320 002321 CTTTTCAACA TGAAGATATA ATAGAAGAAA CAGACTTTGT ACAGGAAAAA GAATCAGGAT ATTGTCAGAA ATTTCTGGAG 002400 002401 AAGGAAGAAG AAATAACCAT TAATGTTACA AGCAAAGCAG GGGGATCAAA AAAAATCAAG AATATATTTC AGTTCAGACT 002480 002481 AGAGCAAATG CTGATTTAAA TCTATTCTAC CAAAAGTACA GCAACTTCAC TCAGCATGCT ATTCTCTACA CTTGAATCCT 002560 002561 CATAAAATCA ACCTGGATTT CATTTTAGAA CTTCTTGCGT ATTTAGATAA AAGTTCCCAA GTCGGAAATA TTGAAGGAGC 002640 002641 AGTATTAATC TTTTTACCAG GCCTTGCTCA TATTCAGCAG TTGTATGATC TCCTATCAAA TGATAAAAGG TTTTATTCTG 002720 002721 AACGGTATAA ATGGATAGCT CTGTATTCTG TTCTTTCAAC CCAAGGTCAA GCTGCAGCAC TCACACTTCC TCCTGCAGAA 002800 002801 GTCAGAAAGA TTGTTTTAGC AACAAATTTT GCAGAGACGG GTAGCGCTAT TCCAGATATT GAGTTTGTAA TTGATACTGG 002880 002881 AAAAACAGAA GAAAATAAGA GCCATGAAAG CAGATAGATG AGTTCTTTGG TTGAGACATT TGTCAGTAAA GCCAGTGCTT 002960 002961 TGCAGTGCGA GGGGAGAGCT GGGCAGGACA GAGATGGCTT CTGCTTCTGG GGGTACACAA GAGAAAAATA TGAAGGCTTT 003040 003041 ATGGATTATT CTGTTCCTGA AATCTTACAT GTACCTTTAG AGAAATTATG CCTTCATATT ATGAGGTGTA ATCATGATTC 003120 003121 TCCTGAAGAT ATCCTTTTCA AAGCCTTAGA TCCGCCTCAG CTCCCAGTGA TCAGCCATTC AATGAATTTC CTCCAAAAAA 003200 003201 CTGGAGCTTG TAAGCTAAAT GAGCCTCAGC TGACTCCGTT GGGCCAACAC CTTGCAGCTT TACCTGTGTA TGTCAAGACT 003280 003281 GGCAAGACGC TTATTTTTGG TACAGTATTT GGCTGCCTTG ACCCAGTGGC AACACTAGCT GCAGTTATAA CAGAGAAGTC 003360 003361 TCCTTTTACC ACACCAATTG GTTGAAAAGA TGATGCAGAT CTTGCAAAAT CAGCTTTGGC CATGGTGGAT TCAGACCACC 003440 003441 TGATCATCTA CAATGCATAT CTAGGATGGA AGAAAGCACG ACAGGAAAGA GGTTATCATT CTGAAATCAT ATATTGCCAG 003520 003521 AGGAATTT |
Predicted Small Protein
Name | NONHSAT008489_smProtein_1487:1723 |
Length | 79 |
Molecular weight | 9053.0008 |
Aromaticity | 0.0512820512821 |
Instability index | 62.9423076923 |
Isoelectric point | 5.60821533203 |
Runs | 11 |
Runs residual | 0.0073483427142 |
Runs probability | 0.0416887475712 |
Amino acid sequence | MKTNKPCDLFIAQLLNILKQQRQQHSENKREISNNPEESWENLVSDEDFSALSLVSANAE DLEHVRNLFRKLQSTPKS |
Secondary structure | LLLLLHHHHHHHHHHHHHHHHHHHHHHLLLEELLLLHHHHHHLLLLLLLLHHHHHHLLHH HHHHHHHHHHHHHLLLLL |
PRMN | - |
PiMo | - |