NONHSAT037288
Revision as of 21:39, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT037288 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
6635 nt |
Genomic location |
chr14+:62584075..62600903 |
Exon number |
4 |
Exons |
62584075..62584306,62585409..62585532,62594515..62594630,62594741..62600903 |
Genome context |
|
Sequence |
000001 GAACAGCTGC GCGCCCGCCT AGCGCTGCGA ACCCGGAGTG AGAGGCGCTT CAGAGACTGG AGGGACGGAC CTGCAGGAGC 000080
000081 CAGGGCTGCC CGCCGAGCTG CAGTTGCCGC TACTGCCGCT GTCAGCGCCC GACTGAAGAG TGACAGCCGC AAAAGCAGGA 000160 000161 GTGAGCACCG AACCCCGCGC TTCTACCTAA CAGGTGCATG CGCCGATCTG GTGAGTGGAC CCAGCTCACA AGATCTCAGG 000240 000241 TAACCATTCA TGAGCCTGAG GCTGTGAGAA ATGCTCGCTG TGCAAAGGGG AACTCTCACC AGATTTTCTG AAACTGTTCT 000320 000321 AGAAATACAC TTTTCGGATT GATTCAGCAT TACCAGCTTA TCCAACAAAA GTATTAACAT ATACATTAAC AACGTCGAAA 000400 000401 GTAGCCTACT TTAAGAGAAA ATATGCAGAA GAAGAAGATT TACATCAAGA TTACCATGGG TATTTTCCAA AACACCTGAT 000480 000481 ATTACCTGAG GACAGAACTT GCATTCTCAA ACTTTCTCTG GAGAAGCTCA GGTTTCTTGA AGACCCAGAA ACCTACTTAA 000560 000561 GAAGGTCTGT GTTAATTAAC AATTTGCTGA GGAAGATACA TCTAGAGACG GAGAAAGAGA GCTATGAATA CTTTAAAGAA 000640 000641 GCTCCCTGTT ATAAGACTGC ATATTCTGAT ACAAGAAAAC GGCTGAAGTT TATGGTACAG GAATGCTGTT CTCAGTCTCT 000720 000721 CTATTATGAA GAGCTGCATT CGTATCATAT TGTGCCTTAT GCTTCGGAGA ATGCCATTTA TGAAATGGGC TACACTAGCA 000800 000801 GCCACTTGGA GCAAAATTCT CAGTTGCTTA TTTATAAAAT GAATTAAAGT AACTGTTAAG TCCATTGATA CTTTGTTTCT 000880 000881 AAATGCTTGA ACTGTTTATA GTGAAGATGT TAATATAAGG CACTCATTAC CAGTGCACTT GATATCAAAG ATGAGATGCA 000960 000961 TGCTGAACTG ATTGGAGAGA GCAATGGTTA TTACTCAGCA GTCCTTAGAA TCATCAAATT GAATAGAAAA TATGTTCACA 001040 001041 TATGATAAAG CGGTCAATTA GTGCTTTAGA AGCAAAGATT TTTTTTAAAC ATAAGATGTG TAGGAAGGGG CCTACGTTAA 001120 001121 ACAATTACAC AGATGAAAAA TTTTCTTTTA TGCCTTGATT TCCAAATTCT GCCACTCTTA CTGGAAAGTA ATGAAAGTAA 001200 001201 CAGATTAAAT TGATAATGCC ATGTCCCTGA GGATGAAGGG TGGAACACAT TTAATTTTCT GTAAATGATA TGAGGAAGGG 001280 001281 CTGGTTCTTT CTGAAGTGCT TTGACTTGTC AAGCATTGTG CCAAATAATT GACACCATTC TCCTTTTACC ATTAGTAGCA 001360 001361 ATTCGAGATG GGGCAAAGAC ACTGCAACTA AACTGCTGAA TGTAACAACC AGATTACTCC AAACTGATCC ATTGTACTAT 001440 001441 TTTGCGGGGA GGGCTTAGAC TTTTCTCTTT AAAAGTGAAT TTTAACGAAA TAGCCTTGCA GATGGGCTTA TCTATAAGTT 001520 001521 CTACAGGTTG GTTAAAATTT GTGGTGGGCC TTTAGTTAGC CGTTTACATT TTATTTGTTT TTTTTTATAG GCTGTGAAGC 001600 001601 TCAGGAAAAG GGTAGGCAGG TAAAATTTGT TTTTAATGAG TTGATACTTT TTAGAAACCT TATCTGCAAA AATTAATGAG 001680 001681 AACAACAAAT TCCACATGAT GTTATTTCTT CATCTAGCTA AGAGTACATT TAAGGCTGCC TGGATGAAAC TTTGCACTGA 001760 001761 TTTTTGTATA ATAGTTGATC ATTCACTATT TGACAAATTG TTTCAGAATG CCTTTGGTGG TGAAGTTTAG ATAAGTCCCT 001840 001841 ATGTTTTGCA ATTTTACAGA TAATTATTTA ACAAGTTGGA TAGATTCATG AAATTGTTTG AAGTGGTTCA TACTGTTCTT 001920 001921 TCAGGTTTGA GTGAGATGTC AGATTTCAGT GTCTGAAGTT TTGTCCTATG GAGCATATCA TTTAAAGAAT TGTCATTAAC 002000 002001 TGATAAAACA GATTGGAAAA ACTAGGTGCC AAAGGTGTAT TTAAGAAAAT ACCAAAGACT CAAAGATGAG TGTTAGGAAG 002080 002081 ACTATGATAA TGAAGATAAG AATCTAAAGT AAGGATTGCA TAGGACATAG AAGAACATTG TTAAAGGGGT TTGGAATGAT 002160 002161 TTGCTTACTA ATGTACTTTC AGAACACTTT ATACATAATA ATGGTAATCA AGGGCACTGC TTTAAATGAA GATACTACAG 002240 002241 ACCTTTAGGA ATCATATGCC TTGGAAAACA ATCTATGTAT GGTGACTTGT CAACAAAGTA TCTTCCCTAG TTGGATGCCA 002320 002321 ACTTGTAACC AAGAAGACTT TCTTCTATTC AAGAGAAATT TGGTTTTAGT TTTGATTTAA TACTTGGTCC CTCTAATTAA 002400 002401 TCACTGGGGT GATTAACATG AATTCTGTTG GTATAAAGAG TATTGGTTCC CTAATTAGCC TGCATTGTTG AAGACCACAT 002480 002481 AGATGTATTA CTGATAAGAC TATGAGGCTC ATGTTTAATT ACTCAATCAA AATTAGGAAG AAATGCTTTG GAAGAAACTA 002560 002561 AAAAATTACA ATTTAGGTTA ATTTTTAAAG GCAATTTAGT ATACATGATG AGCTAGCTTT GAAATACAGA TTTAAATGTT 002640 002641 TAAAAATTAA TTTGAGGGCA AGATTTGGTA CCAAAGTTTC AAAAATTTTA TTTCACTGCT TATAAAATAC TTTATCAGAA 002720 002721 CACTTATTTT AAAAAATAAC ATCTTATTTG AAAAACTCCA AATTTGATGG GATAGTTACA CCATCATACA ATTTTAAAGG 002800 002801 TAGAATTAGC TTTCTAATAC TTTAAAATAT TTTCTGAAAT GAACATTTCA CTTGGTTTAG GACCGTGTCT GTAAGTAAAA 002880 002881 GACACCAATG CTAATAGATA TGACTTACAA AAATGCCACA TATCGAAATT GATTGAGGAT TGAAATATAT ATACTTTGGC 002960 002961 ATTGAGAAGA GAGGAAGAGA AAAAAATAAA AAAAGTGTGA CATTGTAATA TTTATTGTAT TTAATAAATC TTGAAGAAAG 003040 003041 AACTCTTGAG CAATGAACCA GTGACAGATA TAAAAGCCTG TTTTATTTGA TGACATCATT AACTGAGTTT TCTCATCTAT 003120 003121 ACATTCATAC ATCGAGAAGG AACTGTCTTA AAAACCAGTG TTTCTTTTTT TTTTTAAGTT CTAGCGTACA TGTGCAGAAT 003200 003201 GTGCAGGTTT GTTATATAGG TATACACGTG CCATGGTGGT TTGCTGCACC CATCAACCTG TCATCTACAT TAGGTATTTC 003280 003281 TCCTAATGCT ATCCCTCCCC AGTGATATTT GTTAATATGC TTTTTTAAAA AAGTGTCTGC CTTGAAACTG GTAATTAAAA 003360 003361 AATATCTCCT AGGGCATTTA ATTATTTTTC CCAATAAACA ACTCATAGAT AACGGGTTGA CTAATGTTAT CTTTATTTAG 003440 003441 AAAATTTGTA TGTAAACTGT GTAAACTTGT CTGAGTTAAC CAATAGACTA CCGGGGTTTT AGCATGGTAA ACTGATATAC 003520 003521 AGGGAGACCC AAATACAGGC TTGCTTTGCT GACTACCCAG CGTGCTTTAT TACAGGAGAT GCAAAAGGTG GAAGACCAGT 003600 003601 TACACCTTTT TTTTTTTTTT TTTAAAACCT GGACATCCTT TCTCTGGTGA CAAGAGCCAT CCTTATGGTA AGGAAGGTGA 003680 003681 GATAGAAAAT GGAGAACCTT TGGTAATGTT GATCTTTCTT GTGGGTGTCC ACCTAGCCTA AAAGCCAAGT GAAGAAGAAC 003760 003761 ATAAAAAAGC AGAAGAGGAA AAATGAAGAA AAGAGGAAAA AGAGGGTGGG GCCAGAGAAA TAAAGAGTAG GATTAGTAAG 003840 003841 TGAAAGAAAA AGTTGCTTTG TTGTGTGGGG GGGGTGTTCT TGCTTGCTAT ACTCAATTTT GCTTTCCCGT GTCTGCTGTA 003920 003921 CACAAAACAC CTGATCTCTG CAATGTATTG CTCCTTTCTT TCATTCACCT GTGATGCATA AGACTAGATT ATTTTCGGCA 004000 004001 TATCTACTGT TTGCAAAGTG TTACTACTGA AAAATATCCC TGAAACTGAG CTCTTTGGGT GGATAAGCAA AGGAAAAATA 004080 004081 GAAAATAATT AAGGTAAGGG AAAGGCTAAA GGATAAGCCT GTGTATAAAT GGGAAATGGA TAAGCTCAAA TGCATTATCT 004160 004161 GGTTTCAATG TAACACCCAA GATTTAACAA ACTCAGTGCT AGAAGACTTG AAAATAAGTG TAATTTACCA CCATCTATTG 004240 004241 AGCAGCTATT ATGAGCCAGG CACTGTGCTA GGGCTGGGGA TACATAAGTG AATAATGCAC AGTCCCAGAA CTCAGATTAT 004320 004321 TTGGTTTTGT TTTACCAAAT CCAAATGCAG TACCTGCATT TCTCTTTTCC AAACTGAGAT GGCTATCAAA CATGTCTTTC 004400 004401 AGAAAGTGTT TGCAGGTGAG AAGATGCGCA AGGTGAAGGA AAGTTTTCCT GACCCAGATC TTAGAAGGAA AGGAGAGGAT 004480 004481 ACATTTTGCT TTGTGGCATA TTTATTGTGG GCAAAAAGCT ACTATTGCCT AAGGGAAGTA CGGCTGACCT TAGCCCATCC 004560 004561 CTGGGGCATA TCTTGTGCGT GTGGTGGGGA GACAAATCAG GTAGGGAACA ATTCCTTCTC GCCTTACCTC TCTAGCTTCC 004640 004641 ATGTTCTTTT ATGGAACAAA TCAGATTAAT ACTAATGTTA AGGAGAGCTT TAAAGGAGAA AGAGAATCAA TAAATCACAG 004720 004721 CCTGAAAGTT GTGTATGTTG TGTGCAAGCT CAGAGGGGCA GTCTTCTTCA ATTTGCCTTG TGCTGGTGAA TTGCTTGAAT 004800 004801 GAACTTCGGT ATTTCTTAAC ACCAGGTACT GGAGCCCACC TTCTTTCTCT CCCTCTGGTT TCCTCTTTAA ATCACAGCCT 004880 004881 GACCCCAGTC TTTATAGTCC ATTGTAAGTG GAAGTTATAG CTCTATTCTT CACCCACACC TTGCTCCCTA TCATTGATAC 004960 004961 TTAGAAGAAA GTAACAATTT GCAGTACTGG CTGAACTCCT TTGGGAAAGT TTCTGGAGTG TATCAAATAA GAATTCATCA 005040 005041 TAGTAACATG GTCGTTACTG GCTGAACAAA ATTCTTTTTG AGACTATTGT ACTTAGTCAT TAAATAATTG TTTACTAAGG 005120 005121 CAATTTTCAT GTTTCTGGAA TTCAGTGTAA TAGTTAACAG CTGTATATGT CTCACAAAAG AAACTACTTA GGTTGGAAAC 005200 005201 AATGGAAGGT TGTGTATAAT TAATTCAATC AGGTCATGAA TATTTATGTA ACATATGGCA TTTTAATTTA TATGTTCCCA 005280 005281 TTCTCATACT TCATTACTAT ACAGCAGCAA CAAGATAAAT TTCAGGTTTT TTGTTTTTTT ATTAAGTGGG CCATGTCTAA 005360 005361 AAGTTGTCAC ATTCCTGGTT GAATATTATG GACAAAATTT CCCCATTAAA GTAGTTTTGT CTTTCTCAAG GATTATCCTT 005440 005441 TAGGGTTGGG TGGATTAAAA ACATTACATT AGTGCTTCTT GAGCATACAA GTCACTAGGG ATCTTGTGAA AATACAGATT 005520 005521 CCTTTTAGTA GGTTTGGGAT GAGGAATGAA GGTCTTCATC TCTCAAATCT CCCAGGTGAT GTGGATGCTG CCAGTCCATC 005600 005601 GACCACACTT TGAGTTGGGA GATTCTACAT CTTTTGAGAA ATATCCACAC TGAAGCCTAT ACTCTTAAAC TTTCAAAGAC 005680 005681 TCTGTGTTCA TGTCTGTGTT CTGCAAGAAT TTTTTCTTTT AAGAAATAAA CTGCATAAAG TAAAATCAGA AAACCATAAC 005760 005761 ACTGGTTTTC CAAATTTGCC ACAAATACTG TAATACTCTG TAGAGTAAAA TGCAAAGATT ATTCCTGTTA CAAGTTTTCT 005840 005841 CTGTATCAAG TGCAGGAAAG GAACATGGGT AGAGTCATGT ACCATTCTTA TCAGTCAGGA GATGACACGT GGTAAATTTC 005920 005921 TCTTCTTGAT TTTCCTCTTG ATTATACTCA CATAAGGGAG CTCCATTTGG TAACAAAGAT GAAATTCTGT TCACAGTTAA 006000 006001 CAAGAATTTA GCAACTTCTT GCTTGGCAAA ATCTGAGACA ACCTTACAAA AACATCCTAC ATTAAATTCA GAATTTTGGG 006080 006081 TAGCTGCATA AGCTGAAGAT TATGGAAAAC CTGAGCTGAA AATGGCACCT GGATCTGTAA CTTCTTGTCT TGAACTCTTT 006160 006161 TTTGAGCTTT ATTCTGTGAG AGATCTTCCC CTACAGTGAT TTTTTCTGTT TCTCCTCAGT CGCTGGGGTC TCAGTAAGGG 006240 006241 GTGGAGGATT GGTGTAAATG AGACAGTCAC ATAAATTGTC TAATTTGAGC ATGCCAAGTG ATTTTTGTCA GCCTCTTTTG 006320 006321 GTCATAAAAT TTTGGTATAG CTATTGTGAA ATATAGTGTC ATAAATTTGT CATAAGCCAT TAATGAAGGA AGAGAAGCAG 006400 006401 AAATTTATTT CTGTGGGAAT GCACTCAAAT ATCAAGCAGA TGGTGTTCTA CAACATTTAT TTGGGAAAAT GTGTATCTGT 006480 006481 TACATAATCT GAAATATGTC TTTTTCACAT TTAAAAATAT TTGGGTCATG ATTTAGAGTT TTTATTGGAT TGTTTTTTAA 006560 006561 ACTGAGAGGA AGAAGAAAGG TAATTGTATT TTAAAACATT TGACATGTTA CTAATAAAAT TTTATTTCTG GTGAA |
Predicted Small Protein
Name | NONHSAT037288_smProtein_3089:3304 |
Length | 72 |
Molecular weight | 8096.2635 |
Aromaticity | 0.140845070423 |
Instability index | 46.9985915493 |
Isoelectric point | 8.63629150391 |
Runs | 9 |
Runs residual | 0.0217939214233 |
Runs probability | 0.0551924473492 |
Amino acid sequence | MTSLTEFSHLYIHTSRRNCLKNQCFFFFLSSSVHVQNVQVCYIGIHVPWWFAAPINLSST LGISPNAIPPQ |
Secondary structure | LLLLLLLEEEEEELLLLLLLLLEEEEEEEELLEEEEEEEEEEEEEEELHHHLLLLLLLLL LLLLLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHHHHHHHL LLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooTTTTTTTTTTTTTTTTTTi iiiiiiiiiii |