NONHSAT054471
Revision as of 22:20, 16 October 2014 by 124.16.129.48 (talk)
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT054471 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
564 nt |
Genomic location |
chr17+:46800530..46802819 |
Exon number |
2 |
Exons |
46800530..46800675,46801690..46802819 |
Genome context |
|
Sequence |
000001 CTCCCGAGCT TTCTCCCCTC TTCCCTGGAG AGCGACTGTT CGGGAGGGTG AGAATGGTAT AAATTTCAAA AACAACGAAA 000080
000081 CCTTCTTTTG CCCCCTCCGC AGCAGTCGCC TCCGGGCTTT ATTGCAAGTT TACGGTTCCA TACAAGTAAA TCCGAAAAAA 000160 000161 AGTGTGTGTG GGGGGGTCCA CACCACTAAT TATTATGGCG AGGAAGATAA AGAAGACATG GACAGAAGGC GGATGGCTCT 000240 000241 GCGGCCTGGC TCCCGCAGAC CGACCGCCTT CTTCTTCCAT TCGAGATGGC TCGTACCGAA CCTCCTTGCC TTCTTCCTGG 000320 000321 GTCTCTCGGG GGCTGGACCA ATACATCTGC CGATGCCCTG GCCGAATGGC AGGCGACATC GGGTCCTGGA CCCCCACACG 000400 000401 CAGCTCAGTA CCCACGAGGC CCCAGGCCGC TGGAAGCCTG TAGCTCCGCG GACGATGAAA GCCTGCCCGC AGGTTCTCCT 000480 000481 GGAGTGGTGA GCCTCTGTCG GAAGGGGGCG CCCACGTCTT TTTAATGGTC CTAACACACC AGTGGAATAA ATCTCTAAGA 000560 000561 TTCC |
Predicted Small Protein
Name | NONHSAT054471_smProtein_194:442 |
Length | 83 |
Molecular weight | 8882.0143 |
Aromaticity | 0.0731707317073 |
Instability index | 48.1134146341 |
Isoelectric point | 10.1920776367 |
Runs | 9 |
Runs residual | 0.0261456023651 |
Runs probability | 0.0182829888712 |
Amino acid sequence | MARKIKKTWTEGGWLCGLAPADRPPSSSIRDGSYRTSLPSSWVSRGLDQYICRCPGRMAG DIGSWTPTRSSVPTRPQAAGSL |
Secondary structure | LLHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLEEELLLLLLLLLLLLLEEEELLLLLLL LLLLLLLLLLLLLLLHHHLLLL |
PRMN | - |
PiMo | - |