NONHSAT056676
Revision as of 22:30, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT056676 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1683 nt |
Genomic location |
chr17+:80231640..80236543 |
Exon number |
3 |
Exons |
80231640..80232359,80232768..80232949,80235763..80236543 |
Genome context |
|
Sequence |
000001 ggggcgagCG CTCCAGGCCT CCTCCCGACC CTGCGCCGTG CCCAGCCCCT CTGCCCTCCT GTTACCCCGG GACCTCGGGC 000080
000081 CGCCAGCCCC TTCCACGTGC AGGCTCCTGC TGCTCTCGCG GGGGCTTTTC GTGTGTCCCC CGAGATGTCG AGGAAGCCAG 000160 000161 GTGAGTTCCT CGCGACAGGC GGTGCCCTTT GCAGGAGGGG ACAGGTAGCT GAGGCGTGGA CAGAGTGACA GGCCAGGCTC 000240 000241 AGGGGACACA GGTGAGACCC CCTCACTGGG CTGCCAGTTC CCGGGCTTGG GGCATCCCAG TACGTCAGCG TCTGCGGCCT 000320 000321 TACCTCCTGA CACCTAAGGC CAGAGACAGA GCAGGCCCGC GCCCTGGGAG GTCCTGATGT CCAGCCTGAA GATTGAGGAC 000400 000401 AAAGCCACCA CCTTTCACAA AATGAGGCCA GACCACCTGC CTCCCTCCAG TCCCTGCGGC CTGGAGACGG AGTCAACATT 000480 000481 CTTATCTGTG TTGGATCTGA ATGTTCCTCC TTGCAAAGGA AACAAGGAGT GGACGTTCAG GCTGATGGCC AGCTTCAAAG 000560 000561 ATCGGGGCCT TTGATTCCCA TCACTGGGAA GAAAGCCCTT CAGACAAGCC CCCCCAGGCT GCAGGTGCAT GGGGACCTTG 000640 000641 AAGAACCCGT CCCCATGGTC CCACGTCCAT GTGTCTCGAG ACCTGTCGCA TCCTCGCTGA AACTCAAGAA TGTGAAACAG 000720 000721 AGTCCAGCTC TCCCACGGGT GGCTGTGATC CTTCTTCCTG GGGAGTCCTG CTGTCCCTGA CTAGGGGCAC CTGCCCACCT 000800 000801 GTCAGCTGCT CCTCCCTCGG CTGGTCCTCC TGGGCTCTGA TGGCCCCAAC ATTTCTAGCT CTTCTCACCC ATAGTGCCCC 000880 000881 AAGCTTCATG CAGCTGCGGC AGcagcatga acagactgag ataGCGGCTT ACATGTAACC GGAAGCTGCA GAAAAACATC 000960 000961 TTCAGACAGC TGAGACGGCT CCCAGGACTC GTGCCTGGCA CAGACACCAT CTGCCTGGCA GGGCAAAGAA AGGCGTCTGT 001040 001041 GAGTGTGGGA GGATTCCGAG TCTAACACCC TGAGCCCAGC CAGGAAGGGG CCAGGAAGGC CTCCTCGTGA ACAACGAATG 001120 001121 AAACAGATCC CAGATCTCAG ACAGGGCGGG GAAGGGGAGG GGTACCATGT CAAGCAGCAC TCTGTGTAAG TCGGCACCTG 001200 001201 CGCACACTTG CATGCAGACG TGTGTATTGT GAGTGTATGG ACATGTTAGA Aatggatgtg tgcatgtgtc tgcatgtgtt 001280 001281 tgtgcattta tgcacagaca ctacacgggc atgcacatca tgtacgtata tgtttgcata tgtgcacgtg tgtgtacgtg 001360 001361 catgtgttcg tgtgtgcatg cacacagcat gcgtgtgtgt gtatacttgc atgcatgcTA ACATATGGTG GAGAATAAAT 001440 001441 AATGATCACC TCTCTGGAAC TGGGGAAAGT AAGTGTTAAA CAGATTTTCG ACAGGAAATG CTGCTGCAAG GAATTCGTCC 001520 001521 GTAGGCTAGC ACTACAACCT GGAGGCAGGG AGCAGTGAGG AGTGGAAGTC TTCCCATCAG AAGTGAGGAA ggctggatac 001600 001601 ggtggctcac accagtaatc ccagcacttt gggaggcaaa ggcaggagga tcacttgagc ccaggagttt gagaccagcc 001680 001681 tag |
Predicted Small Protein
Name | NONHSAT056676_smProtein_668:937 |
Length | 90 |
Molecular weight | 9656.9181 |
Aromaticity | 0.0674157303371 |
Instability index | 78.4348314607 |
Isoelectric point | 4.62567138672 |
Runs | 9 |
Runs residual | 0.0420797532496 |
Runs probability | 0.0247011717601 |
Amino acid sequence | MCLETCRILAETQECETESSSPTGGCDPSSWGVLLSLTRGTCPPVSCSSLGWSSWALMAP TFLALLTHSAPSFMQLRQQHEQTEIAAYM |
Secondary structure | LLHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLEEEEELLLLLLLLLLLLLLHHHHHHHHH HHHHHHHLLLHHHHHHHHHHHHHHHHHHL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHH HHHHHHLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | ooooooooooooooooooooooooooooooooooooooooooooooooTTTTTTTTTTTT TTTTTTiiiiiiiiiiiiiiiiiiiiiii |