NONHSAT059022
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT059022 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
6264 nt |
Genomic location |
chr18+:37086726..37373060 |
Exon number |
19 |
Exons |
37086726..37086998,37092162..37092221,37092241..37092408,37096156..37096591,37115422..37115581,37157497..37157576,37192161..37192510,37202657..37202756,37236410..37236625,37236839..37237455,37243283..37243787,37244597..37245453,37258562..37259489,37260063..37260606,37261829..37262456,37262474..37262553,37278354..37278493,37331293..37331325,37372970..37373060 |
Genome context |
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Sequence |
000001 AATAGGAAGT ATGGTTTATT CCCCCATGCT AATCTGGCTA GATTACCCTC TGGACTATTG GTCACATCCT GACCATACCG 000080
000081 TGTTAGTTTT TACAAAAAAT AGCATTTACA GCTCAACCTG CATTACAAGG AAAAAATGAC TATCAAGACT TCACAATAGT 000160 000161 GGTCTTCAAA ACATTACAAA TTTCCAAATG TCAAAAATCG TGAGACATCT CCAAACCACA TCAACAGTTA ACAGAAAGTC 000240 000241 ATATTTGTCC CTTGAAACTG CCTCTACAAA ATTACCCATG TGAGAAGAAA CAAAGTGACT TCCATTCCTG CTTAGGTATC 000320 000321 TGAGGCTGAT TTCACTTTGA TCTTAGATGA GAAGAAGCAG GTAAAGCTGT TAAGAATCTG AAAGAAAACT GACTCAGTTG 000400 000401 GCCAGAAGGA CTCAGAAGTA GGAGTCTGGA CAACAGTCTC CCGAGAGTGA AGAAACTGCA CTGTTGCTGA GAAGCAGCTT 000480 000481 CCCTGGTGCC TAGGAATGAA GAGACAGTGT CTTGTTCTGT CACCCAGGCT GGAGTGCAGT GGTGTGATCT CAGCTCACTG 000560 000561 CAACCTCTGC CTTCCGGGTT CAAGCAATTC TCCTGCCTCA GCCTCCAGAG TACCTGGGAT TACAGGTGCC CACCACGACA 000640 000641 CCCTACTAAT TTTTTGTATT TTTAATAGAG ACAGGGTTTC ACCATATTGG CCAGGCTGAT TTCGAACTCT TGATCTCAAG 000720 000721 TGATTCACCT GCTTTGGCCT CCCAAAGTGC TAGGGTTACA GACATGGGCC ACCACACCTA ATCAGTAGAT AGATAGGAAT 000800 000801 TTAAATGCTA ACTTTCTCCT ACTACTTTCA ATAAATGGAT ATATGGCTTT CAATATTCTA ATCACAAACA CCTAGCTGCC 000880 000881 AAATAAAGCC AGGTGTCCAG TCAATGCAGA TTAATCTGTG TGTTATATAC AGATGTGATG CCCAGAGGAA AAATAGTGAG 000960 000961 CCAATATTCT TCTTTGCAAC TGGCATAAAT CTTAATTCAT TCTACACATG TGATGAATAC AACTTGCATT GCCTCTTCTG 001040 001041 TAAAGGTGCT TTCATTCCAG TAGTACAGGT GGTTTCAACC ACATACATAA GGCTCCTTCC AATGAGTTTC TTAAGAACTT 001120 001121 GATTTTATTA CAGGGCAAGT AATTATCACA AACATTTAAC AGTAATTTAA ATGATTTAGA GGCAGACACA GATAGACAGA 001200 001201 GAGAGAGAAA ATGAATTAGT GATGTGCTGG CGTCCACTGA CATCTAACCA TGTAAGTCAA ATTAGCCATG ATAGGAGTAT 001280 001281 AGTTACACCA TGAAAATCAC AACACCACAC ACACACGTGC ACACACACAC ATAAATCAGG TTTATTTGTT TTTCAGAGAG 001360 001361 TTTGTTGCTA AACATTTACC AGCACACCCT AAAGAGAGGA GAAAAAAATA TGTGAAGAAA AAGAAAAAAG GAGAAATCAA 001440 001441 AGAAAGAGAA AGCAAAAAGA GCATATTTGG ATGTGGAAGA AGAAAAAGAC AAGTTGAACT GTCTTAAATT CCAGCCCATG 001520 001521 AAAGCCTTTT TTTTCTTTCC TTCCGTGTAG TTTCCAGACT AGCTGATAAA CTTCCTAAAA TATTACCCCA AGTTTTACAA 001600 001601 TGTGACTCTC ACCTATTTTC TTCATGTCTT AGGCCAGAGT CTTTCAAGAA AAAAAGTCTT ATTAGAGAAG TCTTCATATC 001680 001681 TCGTGAGGAT GAATTAAAAG CAGAATCTCA ACTTTGCTAC CTTTAAATGT CACGGAGAGA AAAAACTGCA AAACCATGTG 001760 001761 CAACAATATC CATGATAAAT CATCTTTGAT CTCAACATAA CGGAGACTAT AAGGAGTATA AAGACTAGAA GAAAGAGTAG 001840 001841 AAGCCAGAAA TTTTACAGAT TTTTTTCTGA TTTTAATTTA TGTGTGTATA AATATCTTGG TGATATTATG ACATGCCACA 001920 001921 TTGTTGCAAA CGAACTACTC TTTTAGTGCA TCAGTGTTCA GAGTAGTGAT TGTATTAGCC TACAGTAGCC AAGAGTGCAG 002000 002001 AGCAGTAATT TTCCCTACAT CATGATGTCA AACTTTTAAA TCCAACCGTT CAAATTAGCA ATAAGTAAAC TGCCATACTT 002080 002081 ACTCATTTTT TCAAAAAAAA TCAGATTTGA TCTCATACCT AAGAAATTAA ATTTGTAATA TTGGCAATCA GAGCTAGCCA 002160 002161 TATGTTTGTT ATTTAGCCAC CATGTGTATT TGGCAAGTTT CTACCCAGTG TATATTTCAA ATATCTTTTT CCAGTCTGTT 002240 002241 AGTTTACTTT AAGGATTTTG TTTATGACAT CTTTTGGGTA AACTTCAGCA CTTTGATGAT CCTCTTTTAT TGTCTTCTGT 002320 002321 AGCTCTACAG CTATGGAGAC TGGCTGTCAG TCTAATTTTA ATTTTAATTT TAATTTTAAT TCTATTATAG GTGATCCACA 002400 002401 ATCAATTCAG AACCTGGTCT TCTATGGTGG CTCACAGTTC CTGCACCCTA CAATATCGTG AATTTTCTTC CTCTTCATCT 002480 002481 AATGACATGA ATATGCTCCA GTGGATCCTA GGATATCTTT CACATGAGGT TACCCTTGCC CTTTGGATGT CAGGTGGAAC 002560 002561 AAAGGGATGG AAGATTTTTT GTACTGGGAC ATTCAGTAAA CCCCTAGGCC TACCTATTGT CTAGTCAGAG TTAGAGAAGC 002640 002641 AAATGATGTC TGTGAGGGCC TACAAGGCAC AAGAGGATGA AAGTTTAACT TAAAGTTTAG ATGCTGATAT TCTAGCTAGT 002720 002721 AATAATGTAT GATTGCCTCA TGTACTACTC TTTTTTTATA TTTCTCTCCT AATGTATAAA GATGGATTTC AAAAGATAGG 002800 002801 CAGCCTGGGA TTCAAATTCT GATCATCTTT TCACTTTGTA AACTAATGGA TATATTTTTT TAAAACATTG TGTTTAATAC 002880 002881 ACGCCAATGC CAAAGGCTTT CTACAGACTC ATGTGGAGTG GGATGATGCC CAGAATGTCG ATAAATTGAC AGAATAATAT 002960 002961 GAAGAGAATG ATTCTGTCCA AAGAGGTTAA TCATTAAAAT GCTCAGAGGA GACCTCAGCA GGCCCTTGAA GAACACAGCA 003040 003041 ATTTAAGAAG TAAAAAGGAG GATGTAGGGG AATGTTAGTC AGGGTCAAGC CAAACATTGA ATTCAGCATG GCAAATGAAA 003120 003121 TTTACTGTAA GTGGTCTCTG TGCTGAGATA CATATTACTG TTTGTGCAAA TTTAGTTCCG TTAACTTTTC CCAAAACTTC 003200 003201 TTCACCACCT TATCTTGGAG CTTAATTCTA ACTCTCTCTA CTATGTCCAT ACTATGGGAA TGTCTTCAAG ATAATATTGT 003280 003281 CTTGTTAAAA TTCGGCTTCA GACTTCAGGA CTTTTACATT CTTGGATGGG GATCTAAACA AGACATGAAC CAATCATAAG 003360 003361 GAAATATGGC TCCTTCTCCA TTATTTTAAA CAAGAAAATA TTATTGTTAT TGTAGCTGTT TGAGAGACAA GGAGATTAAA 003440 003441 CTTGCTACGG TTAAGAAATT TGAAAGCAGA TTTTTTTAGA GGCAGACAAT AAGGAAGAGT GTTTTTGGAC ATACTTTGCT 003520 003521 CAAACCTTTC CTGTGTTTGA GTATTCCACC CAAACAGAAC TTTCTCCATT GAGCCATTTG CTGTCCTGTC AGCTAAAAAA 003600 003601 TAAAAAATAA AAAAAACAAT AAAACAAAAC AAAACAAAGA GCAAAAACCA TTTTATCTTC TTGATACTGT GGCACTTGAT 003680 003681 GTGCAACAGA GAGACTACAT TCTTGCAATC GGTCAGAAGC AGAACTTGAC CAATATGAAA CAATACATAT CCTAAGAAAA 003760 003761 CAACATGCAC AGATAATTTG CAGAAAGTTT AGAACAACAA CAATAAAATA TTTTAATTTG CTTTTTTTGA GATGGTGTCT 003840 003841 TACACTGTTG CCCAGGCTGG AGTGCAGTGG CGCAGTCTTG GCTCACTACA ACCTCTGCCT CCCGGGTACA AGCGATTCTC 003920 003921 CTGCCTCAGC CTCCTGAGTA GCTGGGATTA CAGGTACCCA CCACCACACC GGCTAATTTT TGTATTTTTA GTAGAGATGG 004000 004001 GGTTTCACGA TGTTGGTCAG GTCGGTCTTG AACTCCTGAC CTCGTGATCC ACCCGCCTCA GCCTCCCAAA GTGCTGGGAT 004080 004081 TACAGGCCTG AGCCACTGTG CCCAGCCTTC TGTATTATTT TCAGTATATG TGCTGCTGAA GTGAGCACTA ACCTTTTTAA 004160 004161 TGCCTTCATT ATATTTTCAA ATACTTCTAG GAATTAGTAT TACAGGCAAG ATTAATCAGT GTTAACTACT GATATTAGAA 004240 004241 TAATGATTCA ATTTAAATCT TTCAAATAGT AATTTGTCAA ATAAATATTC AGGATATCTT GTAATAGCTA AGTTTACAAA 004320 004321 GAAAAGTAAG ACATAGTCCT TGCTCTTGAG AAACTTATGA TGTATTAAGA AAAACTAGAA GCCAATATGG TAAACGATAA 004400 004401 TGAATGTGCA TAAACCAGTG TGGGGATATA AGGCAGTTAC AAAGATCTTC ACAAGGCTCA GGCTGGGCTT CAGATTCTTG 004480 004481 AGGACATTTG AGCCTTGAAG AGGTCTTTCA GTCACTCAAC ATGTATTCCT TAGGTGCCAA TTATGTTCAG ATGCTCAGTA 004560 004561 AATGGAATTG CATTTTGTAA GGAGGGAGAC TCAAGGTCAA AGCAGGAAGA TTGTATCCAA TCTGGAGCCA GCAAATTGAC 004640 004641 AGGGAGAGAG AAGGGAATTA ATAATTACTT CGCACCTATT GTCTACTGGG TGCTTAATCT CTCAGCAGGC CTAGTTCAAG 004720 004721 ATTTTTGTTC CCACATTACA GACGACAAAC TCTAAATGCA AGGAATTCAT AGCACTGCCT TTTGTCCTGT GTGGACTCTG 004800 004801 TCTTGCTTCT TCTCCTGTAT TTTTATGTTG CTTTTTTTTT GGACATTGTG ACAGCATTCT AAGTCCTAAA GCCCACCCAT 004880 004881 GTCCACCCAT CACCTCCTTT TATAATGCTT ATTGGTTTGG GTTTCAAGAT ATCTTTCATG AGCCATACTC ACATTACCTT 004960 004961 CATGATATTA ATGAAATTTC CTACAATTGC ATGTAGATCA CTGTTTCTTA TTATTTTGCA TGAAGTTTAG CTGACACGAA 005040 005041 CCTGCTTTAC AAATGTACAT TTACTCCCAA ATTCACTTGC TTTGCAATGC TTTAGATGGG TTTACCTAAA AACCTTGGCT 005120 005121 ACAATTGAGA GCACCTGCCA GTTCCACAGG AGCAATAATC AGAAGTGGTT TCTGACACTG AGCAATGCTA TGGTCACACA 005200 005201 GGGACTACCT GGAACATTGA GACAATTACC TTAAGATCAA GGCCCCTAAA CCAAAAGAAG AGAAAAAAAA GTTTTTTTGT 005280 005281 TTTTCAATTG CTGGGGTGGC CATATCTTTA TTAAGCATTT ACTTCAAGGG AGGAGATCGA TGAAAAAGGC TAGGACTCTA 005360 005361 ACATAATCAG AATTTCACAA AATTGTTGGG GATGTTAAGG CTCAAAATAA CAACCTGTAT TTTACTATAG AAAAATTTAA 005440 005441 CTGTTTCTTT TAATGTCTCT TAGCATCATG AGGACCCAAA ATTATCTTAT ATCCTTTATG TGACTCAATA TGCCTGCTAG 005520 005521 CAAATTGCTG ATCACCAGGG TGGTGCTTAC TTCTTAGCTT TTAAATTATA TGGTAATATT AAAAATAAGT CTTAAAGGAT 005600 005601 CCTAATTCTT TAATAGTAGC CATCTTTATT CCACAAGCCT CACTGTGAAT TATTTATCGA AATTCATTAA GTGAATCACT 005680 005681 TGCTCACGAA TGTAGCAAAT ATTTGTTAAG CTGTCTCACT GTGTGCCAAG TGGTCACTTT TTGGACATAG AGATTAGAAG 005760 005761 CATTTGGTTC CTACCCTCAA TGAGTTCACT TTAGAATCAA TGAAAGAAGG AACAAAATGA CCTTTGTGAC AAAATCACAA 005840 005841 TACAAAGGAG TAAGTGCCAC AGTATCTGCA CTTATCCAAT ATGAACAAGG CTTCTCAACC TCAGCCTGGG GATTGAGATT 005920 005921 AAGGAGCTGC TGGCATTGAC CTTTGGGAAA TGAGTGATGA TTAGGCAAGT GGCCATGGTT GGGAAGGTAT ACCAAATGGG 006000 006001 AGTTTTATAT GGCATAAGAC ATATATCAAT AATATTTGTG GATGCATTTA ACTAGAGTCC AAATCCAGTG GCCGATTAAC 006080 006081 TCCAACCGTT TTTTTGATTT CTCAGGGTAG TAACCAGCTG AGCTGTTAAG CCAGTCAAGG CAGCAGAACA GTTGCAACAG 006160 006161 CTCAACGGTG CCCCTTTTAA AAATATTTTA GGGATATATT TAAACCTTGT TAGTCATTTA AATATAAGAA GAAGTTCAAT 006240 006241 ATTATTGTTG TTGTAATTAA GTGG |
Predicted Small Protein
Name | NONHSAT059022_smProtein_2423:2623 |
Length | 67 |
Molecular weight | 7345.4559 |
Aromaticity | 0.121212121212 |
Instability index | 57.9909090909 |
Isoelectric point | 7.82623291016 |
Runs | 11 |
Runs residual | 0.0160587915079 |
Runs probability | 0.0491882256587 |
Amino acid sequence | MVAHSSCTLQYREFSSSSSNDMNMLQWILGYLSHEVTLALWMSGGTKGWKIFCTGTFSKP LGLPIV |
Secondary structure | LEEELEEEEEEEEELLLLHHHHHHHHHHHHHHLHHHHHHHHHLLLLLLEEEEEELLLLLL LLLLLL |
PRMN | - |
PiMo | - |