NONHSAT060607

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT060607

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

4598 nt

Genomic location

chr19-:4445004..4449601

Exon number

1

Exons

4445004..4449601

Genome context

Sequence
000001 CACGCTTCCC TTGGCTGGTG TGCTGTCCCG GGCGCTCTGA TCCCAAGGAA GCTGTTGTCT TGGGGACATG CCCATCTGGC 000080
000081 AGCTCTGCCT CTCTGCATCC ACGTGCTCTG TCCCGCTCCC CACATCATCT CAGCAACTAA ACCGGCAGAC TGGGCCGGGT 000160
000161 CCCAATTTTC AGTTGGCATG AGCCCCGGCT CAGTGTGTAG GTCATTGGTC CGTGTGACGC AGGGGGCTGC TGAGGGACCC 000240
000241 TGCTGTGCAG TTGAGGGTGG GGGGTGGTGG GTGGAGCTCT GGGCTGCCTG GGCAGGTGGC CCGAATCCTG ACACATGGCC 000320
000321 CTGGGCTGCC CTTCTGTTCA CCCGCCCTCG TCTGGGCAGC CCAGGGAGGT GCGGGTGGCA GCCCTGCTTC CCAGGCCATG 000400
000401 GGTGGCTCTC TGGGTGTGGC CGTGTGTGAT GGCTGTGCCG AGCGTGGATT TGTGCCCCAA TCTTTTCCAG GTCTTAGGGT 000480
000481 ACGTACTGTT CTCAGCCTCT CCATGCTGGG ACGCTGTTCG CAGTCAGCAG GGCTGGTTCT GGGAAACCCC CAGAGTTCCA 000560
000561 GCTATGACTT CTCCCCTCCC CCGGTAACAT AGGTGGATAG GTGGGACCTC GGGGAGGGGC AGGGGCTGGG GGTATCCGTC 000640
000641 TTCCAGCTAT TGAGTTTCAG ACATTGAGGG TTGCAGACTC ATTTGTGTCC TCTCTGCCAC CTGCCATCCC TGTGACCCTG 000720
000721 GACGATGGGC CTCTCGGTCT CTTTGTAAAC ATGAGGCCCG GGAGTGGTTC CAGAACGTCC ATCATGGGGC TGCGAGAGCA 000800
000801 GGAGGGATGG GGCGTCCATG GTGGCGGGAG GTTCTGTAAG TGGCGGTGGC CTTGATGGAT CTCAGCACTG AGGTCGAGTT 000880
000881 CTAAAGCCAG AGTGTGAGGC ACAGTTCTGT CGCGTCACAC TGGCTTCCAA GTCCCATGGA TCTAGCCTTG AGAAGGCGGA 000960
000961 AGGGGAGACT TGAGTTCTGC TGGGTCTTGG CTGCGTCGCC TCTGCCCTGG GGCGTGGGCA GGGCTGCGGT CTTGGAGGGT 001040
001041 CTCTCTTTTC CTTTCTGTGA TGAGCGCACA GCTGGGGCCG CTCCAAGCCG CTGTTCTGCC TTCCTTTTCC TGCCCCTGTT 001120
001121 ACCTGGGCAG CGGAGGGCCG TGCGGCCCGG GCTCTCAGTG AGTGGCTTTC CCTGCTTCCC TCCTCCCAGC ACTTCTCCAC 001200
001201 CGACCCAGTG GCCGCCTCCA TCATGAAGAT CTACACGTTC AACAAAGACC AGGACCGGGT GAAGCTGGGT GTGGACACCA 001280
001281 TTGCCAAGTG AGCGTGTGGC CCCTTTGCCC TGCCTGGCCC CTCCAGCTCA TCCCAGCACC CCTCCCACTG GGGCTGTCAC 001360
001361 CCCCTCTGGC CCCCTCATTA CCTGCTGAGG TGGGTTGGGA AGGAGCATAG GCCGAGAGTG AGGCAGCTCC ACCCAGAggc 001440
001441 ctcaggcaaa gggctgggcc tccttgggcc tcagtttacc cgtgtgcaaa atgaaggtgt tgaaGGAATC AGGGGTTTCC 001520
001521 CACCCTGGCT TCCTTGGGGA ACATGTGGAG GAGGCAGGGT CCCACCCCAC TCCCCGGGTC TCAGGATCGG GGGCAGGCCT 001600
001601 GGAGGTCCAC GCTGCCCGCC AACGCCGAGG GAGCACCCCG CAGGAGCCCC CTGCTGGCAC TGCGGCCCTT CAGCTCTGGC 001680
001681 TCTCCACTCT TCCGGCACTG TGGCTTCCCC ACCGCTGTGG TTAATTGTGC CCTTCCAGGG CTGGTGGGAC GGTGAGGGGT 001760
001761 TCCGTGGGGC TCCTGCTGGC ACCAGGGGTG GGCTCCATGG GGTGTCCGAG GTGTGCCTTC CACCCGGAGA TGGTCTGCTG 001840
001841 CCCTCGCGTC ACTGGGCCGC TTCTTCCCTC TGACTAGAGG CCAAGTGTGG CTGAGCTGCT GTTACCTGGA GCAGGAGGCA 001920
001921 CAGAGGGGCC GGGTGGGCAG CCTGGGCTGT GCCCCACTCA CCTTCTCCAC CTACCCCAGG TACCTGGACA ACATCCACCT 002000
002001 GCACCCCGAG GAGGAGAAGT ACCGGAAGAT CAAGCTGCAG AACAAGGTGT TTCAGGTGGG CGTGCCTTCT GGCCCCCGGG 002080
002081 GCCCAGGCTG GGGGTGGGGG CAGCTGGCCT GCAGGAGCCG GTGGTGGCCC ACACCAGGCG GTGGGCTCCC TGGAGGAGCT 002160
002161 AGCGAGAGTT GAGCCACAAG CAGTGAAGGG TTCGGCCAGT AGAAGGTAGC AGGACAAGAT GGAGAGCAAG ACTTTTATGC 002240
002241 ACCGGTCACC CCAAATCAAC AAATTCTGCC TCTCCTCACC TGCATCCTTT TCCTCCTCTT CAGCTGGGCT TGTTTGGGAA 002320
002321 CATGTCGACT CTGGGGAGGT TTCTCATGCA AACCAGATGT CTGGTTCTTC TGGGGGAAAG GGCAGGGACT GGGGTCCTGG 002400
002401 GCGGTGTTAG CCTCGCATCA GGCCCCAGCA GTGTCTGGCT CCTCAGCCTC ACTCTTCGTG CCTGGTTGTG ACTCTTTCCT 002480
002481 CTGTGCAGAG CTGTTGGAGA CTCCACAGCC CCCACCGTAG AAAAGCAGGT TTGCATCCAG CACTGAGGCA CCCCCAGGGC 002560
002561 TGGGCCCCAT CCAGGGGTCG ACAGCTGCTC CCAATAGCGA GAGCCGGGCC CCTGGACTGG GTGGGGTGTG GCCAGGCCAT 002640
002641 GGAGGAAGCC AGGGGCCCCC AGTGACGCCC ATCTCCACCC CCAGGAGCGC ATTAACTGCC TGGAAGGGAC CCACGAGTTT 002720
002721 TTTGAGGCCA TTGGGTTCCA GAAGGTGTTG CTTCCCGCCC AGGATCAGGG TAAGTGGACA GGGCCTGGCT GAGTAGGGAA 002800
002801 TGGGGACGAG GGGCCTCGGG GCAGGAGGGC CCGGCTTGGG GGTCTCTCCA TTGCACAGTG ACACCCATGT CCTGCCACGC 002880
002881 TGTAGAGGAC CCCGAGGAGT TCTACGTGCT GAGCGAGACC ACCTTGGCCC AGCCCCAGAG CCTGGAGAGG CACAAGGAAC 002960
002961 AGCTGCTGGC TGCGGAGCCC GTGCGCGCCA AGCTGGACAG GCAGCGCCGC GTCTTCCAGC CCTCGCCCCT GGCCTCGCAG 003040
003041 TTCGAACTGC CTGGGGACTT CTTCAACCTC ACAGCAGAGG AGATCAAGCG GGAGCAGAGG CTCAGGTGGG CCTGACGTCC 003120
003121 GCGGAGCAGA GTGGGGCGGG GCGGGGTGGA AGAACCCCGG CCAGCCCTCG TGACCTGGCC CGCGTGTGCA GGTCCGAGGC 003200
003201 GGTGGAGCGG CTGAGCGTGC TGCGGACCAA GGCCATGCGG GAGAAGGAGG AGCAGCGGGG GCTGCGCAAG TACAACTACA 003280
003281 CGCTGCTGCG CGTGCGCCTC CCCGATGGCT GCCTCCTGCA GGGTGGGCAC CAACGATGCC CGTGGAGGGC GGCTCGGGTT 003360
003361 GGTAGGGGGC CCTGGGCCCC ACCCGCTCTG ACTCCCCCAC TCCCCAGGCA CTTTCTACGC TCGGGAGCGG CTGGGGGCGG 003440
003441 TGTACGGGTT CGTCCGGGAG GCCCTGCAGA GCGACTGGCT GCCTTTTGAG CTGCTGGCCT CGGGAGGGCA GAAGCTGTCC 003520
003521 GAGGACGAGA ACCTGGCCTT GAACGAGTGC GGGCTGGTGA GTGTCGGCCC GCAGGAGCAC CGCTGACCCG ATGCCTCTGC 003600
003601 AGGTTCTCCT GGGACCGGCA CAGACACCCC CAGGAGGGAG CCTCCTTGTT CTCagagcag ggggcctggg caggtccctg 003680
003681 ggtttgaatc ctgctttccc acttactggc agcagggcct cgagcaagtt cataactact ccacgcctca gtttccccat 003760
003761 caaatgggAG CGGTGACGTG CGTTAGCTAG TGCAGTAGGT TTAGGCTTAG GTCCTGGAGT CCCGGAGGGA GAGGGCAGGA 003840
003841 GGCCTGGGTG CGAGCCACAG CCTCCACCAG CTGAGATGGC TTCCAGGCCG GGGCATCCCC GCGCCCAGGT TGCCCGCTGA 003920
003921 GTTCCCTGCC GCGGCAAGGG CCGACTCTCG GTCTCAGAGT GACGGCCTAC CCCTACCGCA GGTGCCCTCT GCCCTCCTGA 004000
004001 CCTTCTCGTG GGACATGGCT GTGCTGGAGG ACATCAAGGC CGCGGGGGCC GAGCCGGACT CCATCCTGAA ACCCGAGCTC 004080
004081 CTGTCAGCCA TCGAGAAGCT CTTGTGAAAT AAAAGCAGGG TTGGCCTCAG CCCTGTGGGT CTGTCTCATG CTCTCCCTGT 004160
004161 TCCTCTCCCC GCCACCCCAG GGCCTCCAAG CCACCTCTGG AAATACTTGG CTCTGCCCCA TGGGCACGGG AGGGGCGCCA 004240
004241 GCCGTGGAGC TGTGGAATTG GGCCCCGTGG CAGAGCCCCC ATCCCTTGGG GGCTGTGGGG ATGCGCCCAA GCCCCCGAGG 004320
004321 GAGAGGCCTG GGGACACCAA CAAATCTAAG CCCTCCCTAG CTGCTTGGTA ACTGTGTCAT GAAGCTGCCG GACAGACACA 004400
004401 CGTGGCATCT CCCTGGGCAG GAGAGCAGGC CTGCAGCATG GGTCCTGTTC CCGTGTGCCG TGGGTGGCAG TGGCTGCACC 004480
004481 TGGCACTAGG GCTGCTCTGT GGATGTGGGT GACAACGGCA GGAGGGGATG CTGGCCTTCC TGCACATAGA CCTGCAGTTA 004560
004561 GTAAATCATA AGCCCAAATA AACAGGTTGT TTGAATAT
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Predicted Small Protein

Name NONHSAT060607_smProtein_935:1225
Length 97
Molecular weight 10376.0199
Aromaticity 0.104166666667
Instability index 73.053125
Isoelectric point 10.5408325195
Runs 9
Runs residual 0.040485395189
Runs probability 0.0381754303322
Amino acid sequence MDLALRRRKGRLEFCWVLAASPLPWGVGRAAVLEGLSFPFCDERTAGAAPSRCSAFLFLP
LLPGQRRAVRPGLSVSGFPCFPPPSTSPPTQWPPPS
Secondary structure LLHHHHHHLLLEEEEEEEELLLLLLLLLHHHHHHLLLLLLLLLLLLLLLLLLLLLEEELL
LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
PRMN -
PiMo -