NONHSAT063998
Revision as of 22:52, 16 October 2014 by 124.16.129.48 (talk)
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT063998 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
6041 nt |
Genomic location |
chr19+:28283686..28301979 |
Exon number |
3 |
Exons |
28283686..28284140,28284440..28284558,28296513..28301979 |
Genome context |
|
Sequence |
000001 cacactccaa aacaaaaaca aaaacaaata aaaccatatc gaggcCCTAC TGTGATTTAG AAAACTGGCA GAGCAAGATT 000080
000081 TTCCAGGGAG TTGCTATGAT TTCTCATTTT CACTATTTAT AATAATGGAA AATATGCACT CCTTAGTTTT CTTCTTGGAG 000160 000161 AAAGTCTGAC TTGTCAAACA CAGATGACTT TTCAGTTTAG TTTTCAAGGT TTAATTTCTT ACCTTGGAAA TCAATTAAAT 000240 000241 TTGTTTCTTT AAAATGTCGC AGTAAAATTG CTCCTCCAGA CAGATGTCCA CGGAGATTCT GTCCTGCTGC GTCCGCCTTT 000320 000321 CACAGAACTG AGGTTGTTCC TACACCAGTT TCAGAAGCGT GTAGGCACGC TTTATTACAG TGGCAGCAGC GTCCCTGTGC 000400 000401 GAGGTCTAAC CCAGGTGTGG GCCCTGCAGC CAGCCCGGGG GTCCAATGGG TCCTCCTGGT CTGCGAGAAA TCAAACTTTG 000480 000481 GGCACAAGTC ATGAAGCCGA CAAGCCCGGG AGACACAGTG TCAGAATTAC AAGGTGAGAT CAGCCGCCCG GCCAAGCTAT 000560 000561 CTTCTCGCTA GCAGGTCTCG CATCTGGGGC TCGATCTCGT GCAGAGGAGC ATTTCCGAAG ACACTGGCCG CTCCCACAAT 000640 000641 GGCTCCGAAG AACCCAGCGA CCAGCGGGTT CATGAGTTTG TTGGGGCTGT CCACTCGGTA CCAGCTGCGC AGGGATGTCA 000720 000721 GGACAAAGAA ACAAGTTGCC TGGTTCCAGC CCTGCTTCAG CACGGGGCCT GTGGGGCCCC GGTAAGTCCC GGTGTTCCCG 000800 000801 CACAATCTCC TAACCCTGTG GAAGAATCCC CTGTACTTGG ATTTGGAGAG GTCTGGCCAT GGATTAACTT CACCTTGATG 000880 000881 GTCTCCATGG GACATAGGAC CACCACGGCC TCGGCCACGC TAGCTCACTG GCCGCACCGC TGCCCGCCTT GCTGTTCACC 000960 000961 AGTCCCTGGG CATCCCGCAT CTGGTTGCTG AGGAACGCCT GACGCCGCCT TGTGGATGAA GCCGCAGAGC AGGGAGCTGA 001040 001041 GGCTGCGGCC CAGGCCCAGG CTGCCTTGGC TGCGACTGTG TGCCTGCAGG CCCCATGCCC GGTATCCGGT GGATGCGAGT 001120 001121 GCTAGTCCAG CTGCAGCTGC ATCTTCACGA ACTCGGTGGG GAACGGGATG CAGATTTTTT TTTTCTTttc cttccttcct 001200 001201 tccttccttc caacttcctt ccttccttcc CCTTTCtttc tttctttttt tttttttttt ttttttgaca gaattttgct 001280 001281 cttgtccccc aggctggagt gcagtggcgc gatcttggct cactacaacc tggattcaag cgattctcct gcctcagcct 001360 001361 cccgagtagc tgggattaca ggcatgtgcc accattcccg gctaattttt ttgtcttttt agtagagacg gtgtttcccc 001440 001441 atgttggtca ggctggtctc aaacgcctga ctcagatgat ccgcccgcct cggccaccca aagtgctgag attacaggct 001520 001521 tgaaccaccg cgcctggccC TGTGATGTAG ATTTTGATGC TGCCAGCCAG GCTGCCTGCC GGGATCGCCT GCCCTGGAGC 001600 001601 AGGAGCATCA GCCGTGCGTT CCAGGACGCA GGCATGGCAT GACCGGCAGG AGGCGGAGTG CCCGGCGTCT CTTGGGATCG 001680 001681 GAGCCTCCTG AATTCCACGC TGGGACCTTA ATTTGGTTTT AACACAAATA AAGATCTCAC ATAAAGATAA AAGGGGATGT 001760 001761 GTTGGCTTGT AATTTTTGTT AAAAGCAATG GTATATGTTG TATAGGATAG TGTATTGGGA TCAACAGGTT TTTGGGGTTT 001840 001841 TTTTTCAGCC CACTGACATT GAAAGGGATA AACAGTTTTT TGGTTATTAG TGAGCAGTTT TCTCTCAGGC CATAGTGTAG 001920 001921 GGGTTTGTGG TCATGTAGAT GAGAGATAGG CTGGGATTAA AATTTGTTAT GGCAGTAATA AGAGCAACAG AGCTAGACTC 002000 002001 TGTCAAAAAA AAAAAAAAca tagttagtag aagaaaaaaa tcataggatt ataggattag agcagaaaaa aataaaacaa 002080 002081 aaactacaaa agattaatga aaatatttgg ccttttagaa aagttaaaaa ttggcaaacc ttcagcagac taaacatttt 002160 002161 ttttttaatt caaataaaaa aacgagttaa aaaaggagat attacaacag ataacacaca aattcaaaga ttggtttgtg 002240 002241 gctactataa gcaactgtat gccaatacat tggaaaatct aaaaaaaaaa aaaaaataga caaactccta gagacataca 002320 002321 acctaccaag attaaacagt aaagaaatcc aaaacctaaa cagaccaata acaattaatg agattgaagc tttaataaaa 002400 002401 aaactcttcc aggaaagaac agcccaggac ctgatggctt cattactgaa ttttaccaaa catttcaaga agtaatacca 002480 002481 attcctattc aaactattct gaaaaataag gaggagggaa tactttcaaa ctcattctat gaggccagtt ttaccctgat 002560 002561 atcaaaacca gacaaagata catcaaaaaa aggaaactgc aggccaatat ctctgataaa tactgatgca aaaatctcaa 002640 002641 caaaatacta gcaaacagaa ttcaacaata cattaaaaag attattcatt atgaccaagt ggggtgtatc cctgggatgc 002720 002721 aaacatagtt taatatacac aaatcaataa atgtgatatg tcatatcacc agaatgagga aaacagcgtg gtactagcat 002800 002801 aagaacaaac acatagacca gtgaaaaagg atagagaacc cagcaacaaa tccacacatt tacagaaaac tcatttttga 002880 002881 caaagatatc aagaacatac agtggggcaa agacagtctc ttcaataaat ggtgctgggg aaactggata tccatatgca 002960 002961 aaagaataaa actggattcc tatctcccac catatccaaa aacaaatcaa aattaattaa acatgtgaat ataagacctc 003040 003041 aaattatata aaactactat atataaaaaa gttgtgaaaa attttcagga catcagtatg ggcaaaaatt tcttgagtaa 003120 003121 taccccacaa ccataggcaa cctaagcaaa aatagacaaa tggaatcaga tcaaggtgaa aagcttctgc acagctaagg 003200 003201 aaacaatcca caaagagaag agacaaccca cagaatggga gaaaatactt gcaaaccact caactgacaa gttaataatc 003280 003281 agaatataga aagagctcaa acaagtctat agaaaaacat ctaataattc aattaaaata ttggcaaaag atttgaagag 003360 003361 gcatttctct aaagaaagca tacaaatggg aaacaggcat ataaaagttg aacctcagag aaatgcaaat cagaactaca 003440 003441 gtgagatatt atctcacccc agttgaaatg tcttatatcc aaaagacaga cattaacaaa tgctgacgag gatgtggaga 003520 003521 aaagggaact tttgtgcact gttggtggta atgtaagtta gtacaaccac tataaaaaaa acattttgaa ggtttcttaa 003600 003601 aaaactaaaa gtgagctacc atagctacca tgcaacccag caatcccagt actgggtata tacccaaaag aaagaaaatc 003680 003681 agcttgttgc ttcactgttt acaatagcta tgatttgaaa gcaaactgtc taccaacaga tgaatggatt aaaaaaaatg 003760 003761 tagcacatat atacaatgga gtagtattca gccataaaaa tgagattttg tcttttgcaa caatgtggat aaaagtggag 003840 003841 agtatgttaa gtgaaataag tcagacacag aaagacaaac ttggcatgtt ctcacttacc tgtgggatct aaaaatcaaa 003920 003921 acaattgaac ccatggacgt ggagagaaga ggttagtttt cttaacctct ttgagaggtt aagcaagata gtaggggctg 004000 004001 gcggaaaggt ggggactgtt aatgggtaca ataaatagaa taaatataac ctactatttg gtagcacaag atgactatag 004080 004081 tcaataataa tttaattgta cattttattt tatattttat attttatttt atatatttta ttttattgag gtagagtctt 004160 004161 gctcttgtca cccaggctgg agtgcaatgg tgcagtcttg tctcactgca acctttgcct cccaggttta agcaattctc 004240 004241 ctgcctcagc ctcctgagtg gctgggattg cagccacctg ccaccatgcc cagctaattt tttgtatttt tagtagagat 004320 004321 gggttttcac caCATGCCCA GCCaattgca cattttaaac taagagagaa taattagact gtaagacaaa aaataaatgc 004400 004401 ttaagtgggg gagggtgtat cccattctct atgatgggag tattatgtat ttcatgcctg tatcaaaaca tctcatttat 004480 004481 ccccataaat atatacacct actgtgtacc cacaaaagtt aaataaatta aatttaaaaa attaaaaaat aaaataGCAT 004560 004561 AGAATTAAGT AGGCCCAGAA ATATGAGGAT TTTAATGAAA TGATAATACC TAAGTAATAA TCAATCAAGA AGTAAAAACA 004640 004641 AAGTCATACT TCACTCCCAT TTTTGTTTCT AATCTATATG TTTTCTACTT TAAAGCTGTA GAATTTTCTT TTTTTCATTG 004720 004721 CTAATTATAT TTTAATGTGA CTAGTCTGGG TCTATTTTTT CTAAAATTTT CAGTTTTTCT ATATAATTTT TCTCTAACTT 004800 004801 TTAGTTTCTT TGTTTATGCC CCTTATATtt ttgagaagtg tctattcaga tttttgccca ttttaaaact ggattattta 004880 004881 attattttct attgagtttt ttgtttcttt tgtattctgc ttatcaatcg cttgtcggat gtgtagcttg cacatatttt 004960 004961 ctctcttatc tcttttttct ttttgagaca gagtctctct catcacccag cctagtgtgc agtggcacga tctcagctca 005040 005041 ctgcaacctc tgcctcccag attcaagcga ttctcctgcc tcagcctccc aagtagctgg gattacaggc gtgtgtcact 005120 005121 gcgcccagct aatttttgta tttttagtag aaacagggtt tctccatgct ggccaggctg gtcttaaact cctgacctca 005200 005201 ggtgattcac ctacctcggc ctcgcatagt gctgggatta caggcataag ccaccatgcc cagccttatt ttctctcatt 005280 005281 ttaggaattg tctcttcatt ttattgattg tttcctttgc tgtgcagaag ttttttgtat gatgtgatct catttgtaca 005360 005361 ttttactctc attccctgtg cttttgaaac attatttaaa aatctttgct cagatcaata acccgcagtg tttttctaag 005440 005441 gtttttttgt ggtagtttta tagtttcacg tattcgattt aagtatttaa tccatttcta tttgattttt gtatggagtg 005520 005521 agagataggg gtctagtctt attcttctac ctatggatat tcagttttcc cagcatcatt tacagaaaag accatcattt 005600 005601 atccagtgta tgttattggt gtctttgtca aaaatgagtt cactacaaat gtatgaattt tcttctggat tcactattct 005680 005681 gttctattgg tctacatgtc tgttttaatg tcagtaccat gctgttttgg ttagtatatc tttacagact attttgaagc 005760 005761 caagtagtgt ggtggttcca gttttgtttg gttttgcttt tgcttaagat gcctttgaat attcttttat gtggttttat 005840 005841 ataaatatta gaattttgtt tctacttctg tgaagaatgt cattggtatt ttgatgggat tgcattaaat ctgtaaattg 005920 005921 atttggcagt atgaacattt taacaacatt gattatttta tttcatgcaa tataaaatac cttttcattt tgtttcatct 006000 006001 tctttaattt ctttaattta tattttacag attcattata g |
Predicted Small Protein
Name | NONHSAT063998_smProtein_1094:1267 |
Length | 58 |
Molecular weight | 6942.1101 |
Aromaticity | 0.298245614035 |
Instability index | 57.0684210526 |
Isoelectric point | 5.97808837891 |
Runs | 5 |
Runs residual | 0.0662280701754 |
Runs probability | 0.0171347818407 |
Amino acid sequence | MPGIRWMRVLVQLQLHLHELGGERDADFFFLFLPSFLPSNFLPSFPFLSFFFFFFFF |
Secondary structure | LLLLHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLEEEEEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTTToo |