NONHSAT066371
Revision as of 22:56, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT066371 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
6932 nt |
Genomic location |
chr19+:40818459..40825438 |
Exon number |
2 |
Exons |
40818459..40819345,40819394..40825438 |
Genome context |
|
Sequence |
000001 aaaaagaaaa ggccatacag tttcctctgg ctctcaagaa gctccttctt gaaacccagc tgccatgctg taaggaagca 000080
000081 caggccacag gaagaagtca tgtgtaggca ttctggctgg cagcccaagc tgggccccag ataagtgcca gtactggtta 000160 000161 accaccaggt atctgaggaa gttttaagac gacaccaacc tcagccaaca tcttactaaa atcacatgag cgcccccaag 000240 000241 tgataacagc ctaattaagt ccagtcaacc cctgggacta taagagataa taaaatgatt gttaatttaa gccactaagt 000320 000321 tttggggtga ttagtgatgc attaggtaac tggaacaACt atgccacaat ctgtccattc tccagttgct ggatatttgt 000400 000401 ttccacattt atgctattac aaacagcact gctgtgaaca ttctcataca tgtcttttgc atgtacgtgg aagtttctcc 000480 000481 agggtatata tttgctagga gagtaactgc tgggttggaa agtgtgtcac cttcaacttt accacaacct accaaactat 000560 000561 tttccaagat ggttggtacc agcttacatt ccatcagcaa agtatatcct cccattactc caaatcttcc ctaacacttg 000640 000641 agacttaagg tttttgccag tctactgggt gcacaatggt cttatttcat atccttttaa GGACTGGAAT TTTGTACTGT 000720 000721 TCCCATGAAT TAATCCAAAA TAAGTGCTTA AACCTATAGT AATGTTGCtt ttttaaattt tttatttttt cgagacaggg 000800 000801 gctcactctg ttgcccaggc tagagtgcag tgtcgtgatc acagctcact gcagcttcta cctgttgcgc tcaagtgatc 000880 000881 ctcctgcgct aatttttaaa ttttttgtag agatggagtt tcaccatgtt gcccagtctg gtctggaact cctgggctga 000960 000961 agagatctgc ctgccttggc ctccccaagt gttgggatta caggcatgag ccaccatgcc cagccCGCTT TTCCTTTTTA 001040 001041 AGAATGATTT ACACATTGGG GTTCCATATT AAGGCTTCAT TTTCTAAAAG GGAGTTGTCA ctgggtatga tggctcatgc 001120 001121 ctgtaattcc tacaattaca ggcaagaggc aggaggatca tctgagtcca ggagttcaag gctgcagtaa gctacgattg 001200 001201 tgcctctgca atctggcctg ggtgacagag caagatcctg tctccataat cccagctact cgggaggcag aggctgcagt 001280 001281 gagattacac cactgcactc tggcctgggc aacagaggga gactctgtct caaaaaaaaa aaaggtatag aaaaaaagaa 001360 001361 gggaggctcc agtagcagcc aagcacatct catgcctaga tcttggtttc caccactgtt ctgcaattaa aaggaccagg 001440 001441 ctccttggaa aaatggttgg ctccaggact ggggcaggaa atattcaaga tgagcctgca gcatctctag agcctgaaag 001520 001521 taaggacaca gtaaaaacaa aaacaaggct gggtgcggtg gttcacgcct ataatcccag cactttggga ggctgaggcg 001600 001601 ggcagatcaa ctgaggtcag aagttcaaga ccagcctgaa caatatgatg aaaccccatc tctattaaaa atacaaaaat 001680 001681 tagccaggca tcgtggcatg tgcctgtaat cccagctact caggaggcta aggcaggaga tcacttgaac tcaggaggcg 001760 001761 gaggttgtgg tgagctgaga ttgcaccatt gcactccagc ctgggcaaca agaacgaaac tccgtctcaa aaacaaaaac 001840 001841 aatgggagta taacaagtca aagggactct ggaaccaact gaaagagctc cccatggcca aagtcagact aatgtgagtg 001920 001921 acaaaataaa gaaagtaacg ttggatgata acctcaaata caaagtaaat atccctgagt ccaaactcat aaaaataaat 002000 002001 gactaagtta ctaaatgagg agaagagaca catttccttt gcagaagaat tccaaataat ttatgtaaat cccttgcccc 002080 002081 caaggagatg gagcataaac cccccaactc cttacatgca ggctgtgcag tgaattcctt ccaaagagga caaggtgtaa 002160 002161 agggagaaag aagagtagct ttacaaagtg gagaaacttg acaaacaggt gatcaggatg aacaaaaaca gtggtgaatc 002240 002241 atgtggtcag tgtgtcccct tgatatgtga tgaaatgaca cttccccttt gaggtcttcc tccaaaaaac acgtaactcc 002320 002321 agtgtaatca tgagaaaaat atcagacaaa tcccagctga ggggcatccc ataatatgtc tgaccagaac tcttcgaaac 002400 002401 tatcaaagta ggcatcaaaa ccaaagaaag tctgagcaac tgccctagcc aagaggaacc taaggagaca cgacaactcc 002480 002481 ttacttgtca atataaatgt ctggagccag aatgttatca aatttgataa cataatgtca tatgagatcc tggaacagta 002560 002561 aaatacatta ggcaaaacta aggcaatctg aataaactat agactttagt taatactaat ggatcgatat tatttcatta 002640 002641 attgtgacaa acgtaccacc ccaatgtcag atgtcattaa tattaggagt aactgagcgt ggggtataca gcagctctct 002720 002721 gcactatctt ctcaattttt tctgcaactc taaaactatt ctaaggccag gtgtggtggc tcatgcctgt aatcccaaca 002800 002801 ttttgggagg ctgaggtgag tacatcgctt gagctcagga atctgagacc agctagggca atatagtgag acctcgtctc 002880 002881 tacaagaaaa aaaacaactg gccgggcatg gtggctcacg cctgtaatcc cagcactttg ggaggccgaa gtgagcaaat 002960 002961 cgcctgaggt caggaattcg agaccagcct ggttaacacg gtgaaacccc atatctacta aaaataaaaa attagccagg 003040 003041 catggtggcg catgcctgta atcccagcca ctcaggaggc tgaggcagga gaattgcttg aacccggcag acgcaggcta 003120 003121 cagtgagccg agatcacccc actgcactcc agcctgggcg agagagtgac actccatctc aaaaaaaaaa aaaaatttaa 003200 003201 attaaaaaat tagctgagca tggtggcagg tgcccgtagc cccaggtact caggaggctg aggcaatagg atcacttgag 003280 003281 cctggtaggt ggaggctaca gtgagctggg atcataccac tgcactccag tctgggtgac agagcaagcc cctatctata 003360 003361 aatgaataaa taaagctgtt ctaaaaataa agtctattac aaaaaaAAAA AGAGAGAGAG AGAGAGAGAT TTAGCCCTGA 003440 003441 TTTTGCAAAG GGAAATGTCT CCTCTGCTGC AGGACCCCGA CAGGCCTTCA AAGTTGGGTC TATAGTTGCA GCACTTGCCA 003520 003521 AACTAACTCA GGTCAGATGC CCAAAGGAGG GGTGGAGGTG GCTGCAGCTC AACTCTTGGC TCATCTCAGC AGCAGGGGGC 003600 003601 TTGGGCACTG GAGAAAGGGG GGCTGAGGCT GGCCCAGGCC TTGGCCACTT GCCACAGATA CTGCTAGTTT GCATCTGGCT 003680 003681 TTAGTATCCA CTGATGTGGG CTACCAGAGG AAGGGATGTG TCCAGAGGTG GCCTTGTCTC AGGGCGACCA TCCACACAGA 003760 003761 ATCACTCTGC TGGGCTGCTG CAGGTctggt tctgccattc agcatgagcc ctgggctcgc tgcaccacca tctcctcatc 003840 003841 cgtttatggg atgagaatag gaagaccctg ccttttatga tgttgccctc aggattcgac aagtccaaca acttagccaa 003920 003921 gcgttgattt agtacttcct ggcacacagg tggtagtcaa cgttagctct CAGCATCCCC TGACCCAACT CCTCCAGCGG 004000 004001 TCTCCAGCTG GAAGAGTCCA ACTGCTCTTC ATTCCTTTAT GAAATGGGGT GGTCACTGTG TAAATAAATC ACCTGAAGGA 004080 004081 TGCCAATCAT CTTGGAGGAG AGGCTAGTTC AGATCTGCAA CGGACTCATC ACCAGTATTT GCACTTAAAT AATGTAATGT 004160 004161 AATAATGTGT TCTTCGAAGT CACCCCTGAA TTGATCCCat gtgtaaggaa aattgttcat tctaggacta cttgtaatag 004240 004241 cacgaggtag gaaacaacct gaatttcctt caaaaaggaa ctggttaaat aaattaGACT ACTAAGACAC GTGTATGCTT 004320 004321 GTACATGGAT CCTATATGCT CCTCTGCtgt gtgtgtgtgt gtgtgtgtAC ATCTCACTGG AAAGATTACA CAAGAAATTG 004400 004401 GTTAACATTT GTAGTCTCTG AGGAAGGGAC TAGGGGGCTA GGAGACATGG GAAGATACTT TTCACTGTAG AGACTTTTGT 004480 004481 ATCTTTTGCA TTTTGAACCA TGTGAATGTA TTCTTAAttt ttttttttcg agacaagagt cttgctctgt tgcccaagtg 004560 004561 gagttgcagt ggtgcgatca cagctcactg cagcttcaac ctcctgggct caagggatcc tcccacctca gccttacaag 004640 004641 tagctgggaa tacaggcatg atccaccaAA CGTGGCTGTG AATGTATTAT TTATGCTCAA AAATGCCTAA CAGACAgggc 004720 004721 atggtggctc atgcctgtaa tcccaacact ttggaaagct gagatgggag gattgcttga gactagtagt ttgagaccag 004800 004801 cctgggcaac atagaaagac cctgtctcta aaaaactaaa agtaaaaAGT GCTTAATAGA ATCAGTGAAA AAAAAAAATC 004880 004881 TACCCCTGTG GGTCATGGCT GTTGGGGCGG GCTCGGGAGA ACTGCCAAGT CAAATGTATA ACGGGTGGGC CACTGTGACT 004960 004961 CTGGAGCAGC TGGGAGGTGG AGGCGGCATC GGCTCAGGTC ACAAGGATGT GGCTCTCAAG GCGAGCAGCA TCCTAGCTGC 005040 005041 AAATGCTTCC TAGGACAAGC CAATAAGGTT GGTGCGGACA TCTACACATG GACAACTCTA GAGAGTCCAA ATCCACTGtt 005120 005121 ttttttttgt tttttttttt gagacagtct cactctgtcg cccaggctgg agtgtagtgg tatgatctct gctcacggca 005200 005201 acctccgcct cctgggttca agtgattctc gtgtctcagc ctcccaagta gctgtgatta caggcgtgca ccaacacacc 005280 005281 ggccaatttt tgtattttta gtagagatgg ggttttgcca tgttggccag gctggtcctg aactcctgac ttccaagtga 005360 005361 tccacctgcc tcagcctccc aaagtgctgg gattacaggc gtaagccacc atgccaggtc CAAAATCACT GTCTTAAGAC 005440 005441 CTCCGCCTTG ACCCTTCTCC AAAAGGGCTA TGTTTCAAAT CTGCTATCAA GGCAGCCCAG GTggctgggt gcagtggctc 005520 005521 atgtctgtaa tcccagcact ttgggaggcc ggtgagagag gatcacttga tcccaagagt tcgagcccag catagggtac 005600 005601 atagtgagac ctcgtctcca taaaatataa aataaaataa aaaTTTTTAA AAGGCACCac agggtaggga ttaacgggca 005680 005681 aggattctga agtctgctcc ctggggtcaa actcagtcct gccacccgcc agctgggtga ggccttcagc agttaactcc 005760 005761 cctctctgtg cctctgtaaa gcgcaacaat aagagaatct ccctggcaca gctaaaccct gtgtggtaaa ttacctatat 005840 005841 atgtTTTTAT ATCATTGCAG TTCCTATTAC ACATTGAGAA ATTACCATGG CTCTTAAATT TAGCAACTGG AACTCTTCCA 005920 005921 GTTCACCCCA GCAGTTGTTA AAATTACCTA TGAAGTAGAA TCAGAGGAAA TTATTAGGAA ACAAAGAAGG CTGAAGCTCA 006000 006001 GCAGGGAAAG TGCGCATGTG TGAGCTCTTC CTGGTGGCAA TGACCTGAAG GGGCGGCCCC TGGAATCTGA GGGCCAGCAT 006080 006081 TTGCTGTCCT TTGAGGTCAG GCCTCAGCCA GTCTCAGGAG GGTCTAGCCT GGGCCCCCAC AGAGAAAGGC ATCTATTACT 006160 006161 GCTCTCTACA GTTGTCCCTC ATCCTGAAGT CCGGCCCTTC ACACCCCatc cccagtgcct gggacactgc atgacacaca 006240 006241 gtcagccccc aataTGACGT AACTGAAAAA CTGAAAATAA TGGAtttagg aagatgaaag aagttctgga gatggatgat 006320 006321 ggcgaagggt acacaacagt gtgaaagtac ttaatgccac tgaatggtac agtttaaaat agttaaaatg gtccaggcgc 006400 006401 agtggctcac acctgtaatc ccagcacttt gggaggctga ggcgggcgga tcacctaagg tcaggagttc gagaccagcc 006480 006481 tggccaacgt ggtgaaaccc catctactaa aaatatgaaa attagctggg agtggtggca ggtgcctgta atcccagcta 006560 006561 ccagggaggc tgaggcagga gaatagctgg aaccctggag gtggaggttt cagtgagcca agatcatgac attgtcctcc 006640 006641 agcctgggca acaagagcaa aactctaact caaaaaaaaa ataaacaata aaaataaaat aaaatggtta aaattgtaaa 006720 006721 tttcacgagg tatattttca cacaatgaaa ataaATAAAT AAACGGATGA GATCTAGTCT CATCTTTACC TGCTctctca 006800 006801 ttaattctcc tccaaccccc tgacctctcc taggctgtct ctttttgtca gttcctgttc tctaaacagg gaaagggccc 006880 006881 cagattccct ccaatctcta tgatcccttt ccagctggta ttaccaggcc ct |
Predicted Small Protein
Name | NONHSAT066371_smProtein_1043:1189 |
Length | 49 |
Molecular weight | 5402.047 |
Aromaticity | 0.104166666667 |
Instability index | 78.65 |
Isoelectric point | 9.51177978516 |
Runs | 9 |
Runs residual | 0.0219298245614 |
Runs probability | 0.0344265834462 |
Amino acid sequence | MIYTLGFHIKASFSKRELSLGMMAHACNSYNYRQEAGGSSESRSSRLQ |
Secondary structure | LEEEELEEEEELLLLHHHHHHHHHHHHLLLLHHHHLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |