NONHSAT078550
Revision as of 23:53, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT078550 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1930 nt |
Genomic location |
chr20+:8000549..8008603 |
Exon number |
7 |
Exons |
8000549..8000751,8001038..8001908,8002706..8002802,8003028..8003096,8003204..8003414,8003918..8004099,8008308..8008603 |
Genome context |
|
Sequence |
000001 AAAACAGATG ACCCAACGTT GCCTAAGTTA GAACATGCAC CGCTGCTGCC CAGGCTCCAA TAAGGGCAGG GTTGGCGCGT 000080
000081 GTGGGCTTCT CTAAAGGGAA ACATGGCCAG TAATTTTAAA ATCCATCCCC TCTTCAATGA TAGCAAATAT AAAAGCAACG 000160 000161 GGCTGCAAGG TACACGTATG TTTAATGAAA AATGGAGGGA CGTGGTCACA TTAGATGAAT CTGTACCTTG GGACCACCAC 000240 000241 ACCGTTAATA TATAAGACTG GATTACAATT AAAGGATGAG GAAGCTTTCT CAAAGGGTGC TTTGTATGTG TTTACTAGTT 000320 000321 GTGCAAACCA TGAACCTCGG TAATGTGGTT AATAGACCAT GAAAAGGATG TGGTTTCTGC CCTCGGCTTA AAACAAAGAC 000400 000401 AGCAATAAGA CTAAAAGTAC TTCAGGGCAC ATGAGAGCAA ATTTCAATCA ATACTTATAG GAGAGGGAAG TTAATTTTGC 000480 000481 CTGAAGAGAA GATCTGGCCT GCATTATGCA TTAATTAGTA TTAGCTAAAA ACTATGTGGA CCTAGCCCTT ATCATTAAAA 000560 000561 TAAAACACTC AAGGGTTTAC AAACTATTGA AATTTAAGAA AATGTCTTTG CAATGAATGC TACTAAGACT CACTGTTATT 000640 000641 AAGTACATAC ATATCAATTC CATAAACTCA ATGGAAAACA TTTTACTGTG CTTGTAAAAA GAAGTGACTC ATAAACAGGA 000720 000721 ATTCTGTCAT TTTATCACTT TCATGATAGA ATGATGTGTA GAATTTGTTT TACAATGCTC CAGAAATAAA ATGTAGGGAA 000800 000801 TGGAAAGAAG ATAGGTGAAA GAAAAGTGGT GCAACATCAG TCAGTGTTGA AGCTAAGTTC ATTTTGCTAC TTTACCTACT 000880 000881 CATGCATATG TTGGAAAATT TACAAAATGA AAAGCTAAAA GGAGAGAGAG CATCTTCAGC ATGAAAGACA GCCATTACCA 000960 000961 AAGCATTTCC TATCTTTAAC AAAAACTGAA GTCTTAGCCT TCAGACTAAG GATGGTAGGA AGAAAGTAGC AAGGAAGTAT 001040 001041 GGGACTGACC TTGCCGTAAG GAGTCACAGA CCAGGCTGTC TCTCTTTTGG CCTGCTGCCA TCCGCGTAAG ACATGACTTA 001120 001121 CTCCTCCGTG CCTTCCACCA TGATTGTGAG GCTTCCCCAG CCATGAGGAA CTAATACCCA TCCCATAGAT GTACTTGGGA 001200 001201 TAGACAGCTT CTGGCACTCC TCCCAAGATC TCTCCCTCCT GGTTACAAAA ACCTGAGACT TCCATTTTGC TGGAAACTTC 001280 001281 TTTTCCTCTT GCACACTCAC TCTGCGACTC TGTGTGGAGA GCTCCATGTG ACAAGGGAGG TCTGCAGCCT AAGCAACTGA 001360 001361 GACCTCAGCC CAACAGCCCT CAAAGAACTG GATCTTCAAA CAACCACATG AGTGACCTAG AAGCAAATCT GTCACCAGTG 001440 001441 CTCTTGAGAC GGGCTGAAGT ATTTAATCAC CGGCACAAAA TGTCCCAGTG TTCTGTTCTC CTGCTGTGGA AATTTTAGAG 001520 001521 AAAAGATCAT GATCTAAGAG TCTGCAAGAC CAGAGCAGCC TGAATTGCTG AGCTGCCTGG TGGAGAATAG CAGCATTGGG 001600 001601 TGGTTCCCAG GATTCTTAAA AGGACTTTAC AAAGGCCTGG CCTAATCACT TAAGAGCTCT TAAGGAGTGA ATGGGCTCTT 001680 001681 CCTGAAAAAA GAGCTTCTGC TAACCCTGAA AAGCAAGCAA CAACCCTGTG AACTGCTATG GAGAGAGATG GCCTCTAACA 001760 001761 GCTGAGGACC TCAGTCCTAC AACCACAAGA AACTGATTTC TGCCAACAAC ATGAATGAAC TTGGAAAAGG CCCCTGAGCT 001840 001841 CCAGATGAGA ACACCCAGGT CAACTCAGGT CATGAGCAGA GAACCCTGTT ATATTCTCCT TGGCTTGTGA TCCATAAACA 001920 001921 ATGAGATTAT |
Predicted Small Protein
Name | NONHSAT078550_smProtein_1814:1909 |
Length | 32 |
Molecular weight | 3606.2656 |
Aromaticity | 0.0322580645161 |
Instability index | 66.8387096774 |
Isoelectric point | 7.95489501953 |
Runs | 5 |
Runs residual | 0.0399865591398 |
Runs probability | 0.0246952835188 |
Amino acid sequence | MNLEKAPELQMRTPRSTQVMSREPCYILLGL |
Secondary structure | LLLLLLHHHHLLLLLLLLLLLLLLLEEEELL |
PRMN | - |
PiMo | - |