NONHSAT080297
Revision as of 00:01, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT080297 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2266 nt |
Genomic location |
chr20-:48927248..48937879 |
Exon number |
3 |
Exons |
48927248..48927786,48929451..48930893,48937612..48937879 |
Genome context |
|
Sequence |
000001 AGGGCAGGGC TGCCTCCCAC GGCAGGGGCA GGCAGAGGCC TCTGCGCCGG GTACAGCCTA GGTACCGCCT ACCCCCATGG 000080
000081 CTGACCCTGG GCCCCAAATC CAGCGGGAGG CCTGGGAGCA TCTTCTCCGC CTGAGTCACC GGGCTGGGCC CAGGACCCCA 000160 000161 GCCAAGGGCT TTGCCTCTGG GAAGAAAAGA GCTTTGGAGT CCAGCAAAAC CTGGGAAGCA GGGGGAAGCT TCCCTAGCAG 000240 000241 GTGCTATTTG AGCAGAGGCC TGGAGGAGGG AGACTAGCAA TTATTTGGTC TTCGAGGCAA GTTAGCACCA CACAGAGACT 000320 000321 CTTCTGGATA TAAAGGAAAG ACTGTAAAGA ATTTGCAGAG AGAATAACTC TCGCTATGTG ACCCGAGGTG ATTTTATGCT 000400 000401 TTGCCTGTGC AGCCTATAAA ATAATCTTGT GTGGTCCCCA TGATGCACAT CAACCAGGAG ATGCTGGAGA GTCTGAGACA 000480 000481 GCGTGCTGGC AGCACTCTGC TGGGGGAAGG ACACGGAGGT GTCCAGGCTC GGCTCCAAAA GCAGACAAGC CTGCACTGCG 000560 000561 CTGGAGCAGG TGAGAAGTAG CTGGGTTCCA CCGTGCCCTT TTCGTCTGTG TCCCTTGCCA CCCAACACGA GCTCAGCACA 000640 000641 CAGTTGATCT TCACTAACTA GTCACCCCTC CAAGCTTTTG CAATGGTTGT TCCCTCTGCT AAAGATACCC CCTTCTCCCA 000720 000721 CCTTGACCAC CCGACTAACT CTTAAGCTCA GCTCCCAGGT GCCTCCTCCT CCTTCTTCTT GGTACATGAG TGCCCCGCTT 000800 000801 GGCATTCGCT TAGGGGTGTC TATACACACT ATTTCCTCTG CCTGGAGTAT CTTCTTCCAT GGGGCAGGGG TCAGTCAGCA 000880 000881 CCTTCTGTAT GCAAGGGACA GAAAGCCAGT CCCAACTGTT TTCAGCCAAA AATGGGAAAG ACAGTGGCTC ACATAACTAG 000960 000961 AAAGTTGAAG GTGCCTAATT TCAGGTACAG TGGGATCCAG GAGTTCAAAG CCTGTCCAGC TCTGTGCTGC TTCCTGTCAG 001040 001041 GCAGGCTTTT CCCTTGTTTT GTCCTCTTCT TCTCTAAGCG TTCACTTGCT CACTGTCCAT CCAATGGAAA ATGGCATCTC 001120 001121 CTTCACAAAT CATGGCCAAC CCTGAAGTCC CAAGATCAAG TTTCATTGGG CAGGCTCAGT CATGTGCCCA TCCCTGGACC 001200 001201 AATCACTAGA GCAAGACCCG GTCACATGTC CACCCCTGGA GACAGAGGCC TCTGGGCACC CCCAGCCTCA TGGACTGAGA 001280 001281 AAAGGGAAGA GGGGGTTCTT CAGTAGGAAG TCGAGGTGCT GTTACCTGAA AATGGGAGAT AGATGCTGAC TTGTCCACAC 001360 001361 ACCCGCACCT TCTCCCAGCA AACTCTAGCT CGTCTCTGCA CATTGTATGA CCTCAGGCCA ACCCCTTCCC CTCTCTGGGT 001440 001441 CTTATGTTCC TCCTCCGGAA AATGGGCAGG AGGCCGTTTG AATTCCAACA TTCCAGAATT CTGGGACAGC TTCCAGGACT 001520 001521 GGAGTCAGCT CCCTAGATCC CAGGAACGTT CCAGCACTTC TGGGGACGGA AGTGGAGCAT CAGCCAGAGC CCTCCCCGGC 001600 001601 CCCCGGCCTG GGAACATGTT TAGAAGATGA CAACTGGGCT CCCTTTGGCC GAAATTCCAC TCCCGTGGGG GCCTTGCCAA 001680 001681 GGAAAATAAG CCCAAGAACC AGGCATTAAA GAGTACTACA GCCTGGGTAA TTTACAAAGA ACAGAGATGT ATTTCTAACA 001760 001761 GTCCTGAAGG CCGGAGAGCC GAAGATGGAG GGGCTCACTC AAGCAAGGGC CTTCTTGCTG TCATCCCATG GCGAGGGCAT 001840 001841 CCCATGGCAA GAGGTGGCAC GTGAGACAGC AAGGAATGGC CGAACTCACT TTCATGACAA ATCCACTCTC TCCATCATGA 001920 001921 AGCCACTCCT GCAATAATGA TACTAATCCA TTCATAAGGG CAGAGCTCTC AGGACCCAAC CACCTCTTAA AGGCCCACAT 002000 002001 GACCTTTGGG AGACACGCTG AGACCCTGGC GGTGCGGGGT GAGGACGTGG CCCCTCCCCA GGGCACTGTG GTTGTTTCTC 002080 002081 ACACATATGC CAGATACTGC GCCTCGCAGC CACTTCGTCC CCATTGCCTC AGTTTGAGGC CAAAAGTGAC ACATCAGGCC 002160 002161 ACAGCCACCT ACCCCGTCAG CCATCTCAGC CTCCGTGACC TGAAGGGAAA TGATGAAAGA CTTTTCTAGA AATAAATGAT 002240 002241 TTTTAAAACA AAAAAAAAAA AAAAAA |
Predicted Small Protein
Name | NONHSAT080297_smProtein_785:955 |
Length | 57 |
Molecular weight | 6365.2875 |
Aromaticity | 0.125 |
Instability index | 41.4553571429 |
Isoelectric point | 10.9313354492 |
Runs | 12 |
Runs residual | 0.060987509758 |
Runs probability | 0.0397235470766 |
Amino acid sequence | MSAPLGIRLGVSIHTISSAWSIFFHGAGVSQHLLYARDRKPVPTVFSQKWERQWLT |
Secondary structure | LLLLLLEEEEEEEEEELLHHHEELLLLLLLLEEEEELLLLLLLLEELLLLLEEELL |
PRMN | LLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | oooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiiiiiiiii |