NONHSAT089483
Revision as of 00:31, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT089483 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
4544 nt |
Genomic location |
chr3+:47234969..47239512 |
Exon number |
1 |
Exons |
47234969..47239512 |
Genome context |
|
Sequence |
000001 agacagggtt tcactgtgtt agccaggatg gtttcgatct cctggcctcg tgatccgccc gcctcagcct cccaaagtgc 000080
000081 tgggattaca ggtgtgagcc accgcgcccg gccTGAAATG TGCATTTTTG TTGCATGGGC CTAATTTAAA ACTGGCCCAA 000160 000161 GGGGACATTT TGTACAATCG CCGAGAAATT TGCAATCTCA GATTGAGACT TAAAATTATT AAATTCAGCT TTGACTGAAT 000240 000241 TTTTGATGCA AAAAAAAATC ACGAAACCTT AAATACTGAA CCACCAAAGA AGGGTGATAG ACAATTAACT CTGGCTGTTA 000320 000321 GCCTGTGTTA CTGTCATTAC AACACTTAAA AACTGTGCTA GGGTAAATTA AACCTTTTGG GTTTCAGTAA TTAAGATACC 000400 000401 CTGAGAGGAA CACAACCTCA TAGATCTTGG TTTCTTGTGT TGTGTAGTTA AGTGGCCTTA CAGGCTGGCT TGTGATGATG 000480 000481 TCAGAGAATG GGATGTGGAG CTTAACTGTT CTTAGCATTT TGCTAGGCCC TATGAGGTAG AGGAGGCATT TTTCCCAATA 000560 000561 TAGAGTCATG TAGCTTATAT GTGGtgtgga aataaatgaa gaccaaccaa ataagaacag gcaaaagcga tttcatcaga 000640 000641 gcttgctata gcaaaggagt cagacatcat cacatgtttt ggcagagact caaagtcagg caaaggagtg ggaaagcttt 000720 000721 atggtggaaa aaagggaaga cttcaggtgt gactcaatta gaacccatga gtggtctaat cagaagtggg acatcctata 000800 000801 tggatatttg gctttctttc attggtccta aattggaagc aaggacaaaa attacgtaag ctatctgtta ttattcaagt 000880 000881 cctggctgtt tggggctgat tgttacaggg ttgttgtttg gcttcctgga ctggttgcta aagatagggg tctgatttcc 000960 000961 ttcaagtctg acttatagat agtaggctag ttactgtaga taatgggttg gtttcttggg ctggtggctg cagattatgt 001040 001041 atcagagtcc tatttttata tacggtcttg ctattgtcca tttgcatatt cagtctctcT GTGTTAAAAC TGCTTGAATC 001120 001121 TGGGGCTTTT TTAAAAATAA tagaggtggg gtcttgctat gttggccaga gtggtcgcaa actcctggcc tcaacagtcc 001200 001201 tcttgactca gcctcccaaa atgctagtgt gagccaccat gcctggccTG AATCCAGGGC TTTTTTATTC CACAGCTATG 001280 001281 TTCTTTCCAC TATTGAATGC TATCAGATAA TATCAAGGAA TTAAATAAAA TATAATCAGC TTCTCCCTTT TCTCCTTCAA 001360 001361 ACACATCAGC CAACAGCTTT TTTCTTTTCt tttcctttct tttttttttt ttttttttga gatggagtct tgctctgttg 001440 001441 cccaggctgg agtgcagtgg cacgatctct gctcactgca acctccgcct cccggattca agcaattctt ctgcctcagc 001520 001521 ctccctagta gctgggatta caggtgttca ccactatgcc cacctaattt ttgtatttta agtagagaca gggtttcacc 001600 001601 atgttggccc agctggtctc aaactcttga cctcaagtca tccacctgct ttggcctccc aaattggttg gattacaggc 001680 001681 atgagccacc aagcccagcc AAGAAATCat ttctaattta ggcacaatag gaggttgaat cacatctgat gtaaggcttg 001760 001761 tggactacag gcatttaact gctgagtgag cttagttaca cgtgcagtat cctccttttc gtacatttct gatgttctct 001840 001841 TTTTGCCATA aagtatacaa tttagtagta ttaagtacat tcacattgct atgcagccat aaccactatc catttccaga 001920 001921 acattttcct catcccaaac aagaactttg tattcattac atgataactc ctcattccct cctttctcta cccttggcaa 002000 002001 acaccattct acttctgtct gactactcat acagtatttg ttctttttgt ctggcttatt tcacttagca taatgttttc 002080 002081 aagtttcgtc catttagtag catgtatcag aatttcgtta ctttttaagg ctgaacaagt actccattgt atgtatatat 002160 002161 tacattttgt ttacctattt atctgttgtt gcatatttga gttCTTAAAG TTAATTACAC TAAGTATTAT AGTTAAGAAG 002240 002241 CACCAGTTTT TCTTCTAATA CTATATTTGG AAAAATGGGG AGACAAAAAT AGTACAAGAT AGAGATGCTC AATCTGTAGC 002320 002321 TTGTGGCGAA AAGATTCACA AATATACAGT AAGTAATCAG AGATGGAGGT AACCTATCAA CCAGAATGTG ACAATGTAAG 002400 002401 GAACTTTGGA ATAGGCAGAA AAGAGGACTT GGTGTctcta ataaaaagct atgcattttt agtgcacact cttacaggta 002480 002481 atctaaatat aactctatca ctctatcatt gcctttgagc tactttacaa ctctgtaagt tgtagataac tgatattaat 002560 002561 gcaaaataat tcttgtataa acatgaaaat aaattatatt ctgtgaaAAA AAAGtttggc tattgtgaat aatgctgcta 002640 002641 tgaacatggg tgtacaaata tctgttagaa tccgtacttt tgattatttg tatatatacc tgggagagga attactggac 002720 002721 catatgttaa tttttttttt CTTACCATGA GTTTGACttt ttttttttga aaccgagtct ggctctcttg cccaggctgg 002800 002801 agtgcaatgg tgcgatctcg gctcactgca acctctgcct cccgggttca agcgattctc ctgcctcagc ctcccgagta 002880 002881 gttgggacta caggcgcgca ctaccacgcc cagctaattt tttgtttttt tagtagagac agggtttcac cattttggcc 002960 002961 aggatggttt cgatctcttg accttgtgat ccgcccgcct tggcgtccca aagtgctggg attacaggcg tgagacatcg 003040 003041 cgcccggccA CCTAGCTAAT TTTAAAATCA TTTTTTggcc aggcgcgttg gcccccctcg ccaatcccag cactttggga 003120 003121 ggctgaggca ggtggatcat gaggtaagga gtttgagacc aacttggcca acatggtgaa acccagtctc tactaaaaat 003200 003201 gcaaaaatct cactatgttg cccaagctgg tctcgaactc ctgagctcag gcaatctgct gcttcagcct cctgaagtgc 003280 003281 taggattaca ggcatgagcc accgcgccca gcggatgatg tttttgatgt cgtatctaag aactctttgc ccaactcaaa 003360 003361 gtcacaagat attttctccc atgttttctt atagaagtGG ttttgttttg ttttgtttgt ttgttcattt gagacagagt 003440 003441 gtcaccttgt cgcccaggct agagtgtagt ggtgcgatct cggctcactg caacctccgc ctcctgggtt caagcaattc 003520 003521 ttcgcctcag cctcccgagt agctgggatt acaggcaccc gccaccatgc ccggctaatt attgtatttt tagtagagat 003600 003601 ggggtttcac catgttggcc aggctggtct tgaacccctg acctcaagtg atccgcccac ctcagcctcc caaagtgctg 003680 003681 ggattacagg catgagccac tgcacccagc cGATTTAGCA CCTTAATCAA AAATCAACTG ACCAGCACTC ACATTCCTGA 003760 003761 TTTCAAAATT TATTACTcca gtctgggtaa cctagtgaga cctcacctct acaaaaataa aaagataaat tagccaagtg 003840 003841 tgatggcaag tggctgtaat cctagctatt caggaggctg tgacagtagg atcgctgagc ccaggagatc aagactgcag 003920 003921 ggagctatga tcagtcgtgc cactgtattc cagcctgggt gatagagcaa ggccctgtct ctaaaaaaac aaaaacaaac 004000 004001 aaacaaaaCT ACtgataatc tacaggtcac atttggcagg cttccaaatt aacctgccta gaaaaggtct taggattctt 004080 004081 ggcttacatt ctgtccctta ataaaaaatc ttgGcatgcc tgtaatccca gcactctgag aggctgaggc aggcagatca 004160 004161 cttaagccca ggagtttaag accagcctgg gcaacacggt gaaaccccat ctctacacaa aattcaaaaa ttttgtggtt 004240 004241 gtggtggtgc catctgtagt cccagctact tggtaggctg aagtgggagg attgcttgag ccgggggagt tcaaggctgc 004320 004321 agtgagccac tgcactcctc cagcctgggg cataacagag cgagaccccg tctcaaaaag acaaaacaaa aCAGGCAGGG 004400 004401 CACGGTGGCT CACGCCTgat cttgcggtga gctgagatcg cgccactgca ctccagcctg ggcgacagac tgagactcca 004480 004481 tttcaaaaaa aaaaaaaaag aaaaaaTTAC Cttttttttt ttttttgagg cagagttttg ctct |
Predicted Small Protein
Name | NONHSAT089483_smProtein_1421:1720 |
Length | 100 |
Molecular weight | 11249.8295 |
Aromaticity | 0.131313131313 |
Instability index | 70.3757575758 |
Isoelectric point | 7.53302001953 |
Runs | 12 |
Runs residual | 0.0124777183601 |
Runs probability | 0.0278808219985 |
Amino acid sequence | MESCSVAQAGVQWHDLCSLQPPPPGFKQFFCLSLPSSWDYRCSPLCPPNFCILSRDRVSP CWPSWSQTLDLKSSTCFGLPNWLDYRHEPPSPAKKSFLI |
Secondary structure | LLLHHHHHHLLEEEHHHLLLLLLLLLLEEEEELLLLLLLLLLLLLLLLLEEEELLLLLLL LLLLLLEEELLLLLLLLLLLLLLLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |