NONHSAT097186
Revision as of 01:01, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT097186 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2209 nt |
Genomic location |
chr4-:83814605..83822069 |
Exon number |
4 |
Exons |
83814605..83816000,83816845..83816927,83821230..83821376,83821487..83822069 |
Genome context |
|
Sequence |
000001 AGTTCGAAGG CTTCGAGGCT GCTCCCATAC GCACTGGTGG AAGGAGAGGC CGCGCTCCCG GCTGAGCACG GTGTCACGGG 000080
000081 TGCTGCAGCC CACTGCGGAG CAACTTCGGG TCATCTTCTT GTTACGTGGG GCCCCACCTT CGGGGTTCCC GCGACAGCAT 000160 000161 GAATCACGAC CACTTTAGCT CCGCCCGTTG ACTCTGCGGC TACGACCTTT ATTTGTCACG AAAGGCGGGC TTTAGAGGCG 000240 000241 CGGGACTTCC ACACTTCCTC TCCGAAGGCC CTGCGCCGGT GCCGTAGCCA ATGACAGGCC ACGTTGTGTC CCAGCAGCCA 000320 000321 ATCGGAAGGG CCTGAGCCTG AAGACGTGCA TTTGACCGCT CCTCCCTCCG CGTTGGAGGC GGAATAGTGG GTTTTGCTGC 000400 000401 AACCGGTTTA TTTTCCTTCT GTTTTCACCC ATTCTGGCAC AATCTGGCGC CATCGTCCTT CTTGTGAGGC CAAGCCTGAA 000480 000481 AATGCGAAGC AGAGAGGCAG GACCAAAATT GAGGCGAATC CAGGAACCTG CCAATGGGTC TCCGGGTGCG GTCTCTGAAA 000560 000561 CTGGAGGATA TCGGGAGGAA AGGCTCTCCG ATGCGGAGAT AATGGGGAAG CTCTTGGCAT GGTTGGCTGT AGGTATGTGA 000640 000641 TACCGGAGGA GCAGGAGTCA AATAGGATAC GCCGACTTTT AATTCAAGGA ACCCTTTTCT GAAACACTTT GCCACAATGA 000720 000721 AGGAAATAAG GAATAAAATT GAAGGGTGTT TTTCTTAGAG AACATCATTT GTCATATTTA TTTGATCAAG AAGTTGAAGA 000800 000801 TTTATATAAT AAGgatctag tttgaagcac taagaagaat aagacatcag tttgaaaaga ggctctatca gaacaacacg 000880 000881 aattctgcta aaattgaagc aagaacaaac atcaaatata tgttgacact tgggtggaag aatggtgaac taattgatgc 000960 000961 tttatgaaaa gttgataggg acagtgctcc aaagaaatca gtttacaaat ggataactcg ttttaagaag gcataaggta 001040 001041 atgttgaaga agaagcccac agtggcagat catccacatc agtttgtgag aaaaaagtta gttcatggcg taattgaaga 001120 001121 aaaccaacaa ttaacagcag aaacaacagc caacaccata gacatctcag ttggttcacc ttacacaatt ttgactggaa 001200 001201 aagttcagca aactttatac ctgataggta ccaaaaccat tgcacccaga tcagctacag acaagaatag agctttcaat 001280 001281 ggaaatttta aataagtggg atcaggatct tgaagccttt cattgaaaaa ttgtaacagg agatgaaaca tggctttacc 001360 001361 agcgcaatcc tgaagacaaa acacaaagca gtggttacca agataagtag ttcagttaaa gcacaagagg actggttgag 001440 001441 agcaaaggtc atggcaacag cttttgaatg ctcaaggcat tttgcttgtt gactttctgt agggccaaag aatggtaacg 001520 001521 tgcttatcat gggagtgttt tgagaaactt agccaaagct tcagcagaaa aatccccgag aaagaccaga gagttcttca 001600 001601 ccacaacaat gttcctgctc atccctctca tcaaacaagg ccattttgca agagttttga tgggaaatca ctaggcatcc 001680 001681 accctacagt cctggtttgg caccttctga ctttttgttt cctaatctta aaaaaatttt tcagggcagt acatttttct 001760 001761 caagttaatg tataaagaaa ctgcattgat gtagataaat tcccagaact ctcagttctt tagggatgga ctaaatagct 001840 001841 ggtatcatca cttacaaaag tgtcttgaat gctatagagc taatgttcaa aaatatagtt tatatttttt atcttttaac 001920 001921 catttttcca caaacttttt gaagtctcct tgAATATGTA CCATTTATAA AGGGGAAAAA TTCTGTGACT ACTCATGTTG 002000 002001 ACTTAATGCT GACTTAATTT TCTGTTTTGT AAATATATAC AAACAAGTTG ATACAAATTT TGTTTATAGC CCTTAAACAA 002080 002081 ATTTGTGAAA TAAATGCATT CAGAAACAAA CTAAAACAAT GAAATGGATG CTACTGTTTT ACTGAGGTGT AAGCATAGTA 002160 002161 CTGGCTGCTA TGGAAAAAGT TACATAAACA TTCATGTATC TTGTGATGA |
Predicted Small Protein
Name | NONHSAT097186_smProtein_1511:1774 |
Length | 88 |
Molecular weight | 10206.8399 |
Aromaticity | 0.126436781609 |
Instability index | 43.9379310345 |
Isoelectric point | 9.55780029297 |
Runs | 12 |
Runs residual | 0.000328407224959 |
Runs probability | 0.0122328210563 |
Amino acid sequence | MVTCLSWECFEKLSQSFSRKIPEKDQRVLHHNNVPAHPSHQTRPFCKSFDGKSLGIHPTV LVWHLLTFCFLILKKFFRAVHFSQVNV |
Secondary structure | LEEELLHHHHHHHHLHHHLLLLLLLLEEEELLLLLLLLLLLLLLLLLLLLLLLLLLLLHH HHHHHHHHHHHHHHHHHHHHHHEEELL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLH HHHHHHHHHHHHHHHHHLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiT TTTTTTTTTTTTTTTTToooooooooo |