NONHSAT100928
Revision as of 01:16, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT100928 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1108 nt |
Genomic location |
chr5+:32522864..32523971 |
Exon number |
1 |
Exons |
32522864..32523971 |
Genome context |
|
Sequence |
000001 ATGGCCCGGG GGCCCGGCCA GCTAGGCAGG CCTCGCCCCG ATACGGTCGC CATGCCCAAG AGAGGAAAGC GACTCAAGTT 000080
000081 CTGGGCCCAC GACGCCTGCT CTGGACAAGT GACTGAGGTG GATTACGCCA ACTCGGATCC AGCGGTCGTG AGGTCTGGAT 000160 000161 GAGTCAAGAA AGCCTTAGCC AACGCTGTTC AGCAGGAAGT AAAATCTCTT TGTGGCTTGG AAGCCTCTCA GGTTCCTGCA 000240 000241 GAGGAAGCTC TTTCTGGGGC TGGTGAGCCC TGTGACATCA TCGACAGCGG TGATGAGACG ATGCCCAGGA GGAAAGCATC 000320 000321 TGTGAGAGAA CTGTCTCCAG AAAAAAGAAA AGCAAGAGGC ACAAAGAAGA ACTGGACGGG GCTGGAGGAG AAGAGTATCC 000400 000401 CATGGATATT TGGCTATTGC TGGCCTCCTA TATCTGTCCT GAGGACATTG TGAATTTTTC CCTGATTTGT AAGAATGCTC 000480 000481 GGACTGTCAC TTGCACTGCT GCCTTTTGGA CAAGGTTGTA CCGAAGGCAC TACACGCTGG ATGCTTCCCT GCCTTTGCGT 000560 000561 CTGCGACCAG AGTCAATGGA GAAGCTGCGC TGTCTCCGGG CTTGTGTGAT CCGATCTCTG TACCATATAT GTATGAGCCA 000640 000641 TTTGCTGCTC CAATCTCCAA GAATCCAAGC ACCCCCAGCA CATTAAAGAA TTCCAAATGC TTACTTTTCT GGTGCAGAAA 000720 000721 TATTGTTGGG AACAGACAGG AACCAATGTG GAAATTCAAC TTCAAGTTAA AAAAACAGGT TAAAGAGCAA GTGTACAGGA 000800 000801 GGATTGCAGC CCCCTGTTCA GTACGAAGAT GTTCATACCA ATCCACACCG GGACTGCTGC CTACTGCAGG CCACCACCCT 000880 000881 CAATTTCATC TTCATTCCGA TTGTCATGAG AATGATATTT ACTCTCTTTA CTATCAATGT GAGCAAGGAC ATACGGCATC 000960 000961 ATTGAGTGAG ACTGGTGTTT CAAGATTCCC CTGTCCATGG TGGTCGGAAA CTGTGCAGTG AACAGGGTGT GCAAGTCATC 001040 001041 CTGGACCCAG TGCACAGCTT TCGGCTCTTT GACTGATGGC ACCCTCAGTA CCCATTCTCC CTGAGAGC |
Predicted Small Protein
Name | NONHSAT100928_smProtein_401:685 |
Length | 95 |
Molecular weight | 10986.9827 |
Aromaticity | 0.0851063829787 |
Instability index | 83.0042553191 |
Isoelectric point | 9.29840087891 |
Runs | 12 |
Runs residual | 0.00115633672525 |
Runs probability | 0.0385458988401 |
Amino acid sequence | MDIWLLLASYICPEDIVNFSLICKNARTVTCTAAFWTRLYRRHYTLDASLPLRLRPESME KLRCLRACVIRSLYHICMSHLLLQSPRIQAPPAH |
Secondary structure | LLHHHHHHHHLLLHHHLLHHHHHLLLLEEEEHHHHHHHHHHHHLLLLLLLLLLLLLHHHH HHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLL |
PRMN | - |
PiMo | - |