NONHSAT107141
Revision as of 01:42, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT107141 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1316 nt |
Genomic location |
chr6+:3480109..3483790 |
Exon number |
9 |
Exons |
3480109..3480185,3481643..3481771,3482003..3482125,3482206..3482315,3482415..3482510,3482592..3482762,3482855..3482934,3483008..3483161,3483415..3483790 |
Genome context |
|
Sequence |
000001 TACAATTCCT TTTTTCAATC CATCTTCCTT TTTTCACATT TGACTATAAG CAGTAAGGAG AAACCAAGCC TGTCCTTGAC 000080
000081 AGCCTTTGAT ATTTCCAGAG TCAATACCTG CTTTCCATTC TCCACAGCAT CTAATATAAG TCATGGCTTC TCATCTGTCC 000160 000161 TGCTTCCCCG CTTCGCGTTC ACCACTGTGA GCACAACTCC AGCTGCAGCG GCGGCTCTGT CCCACAAGAC TGCCTCACCT 000240 000241 CTGATGCCAG CCACAAGTTC CAGGTCTCCA GATGACTACC GCTTCTATTT GACTTGGCTA CAAATTCAGG GGTTTCCGGC 000320 000321 CCCACCTCAA AAAGTATAAT ATAATGTACT TTCATTATAA AGAATATAAA AGTATAATAT ACTTTTATTA AAAAGAATAT 000400 000401 AATATATATA AAGAACAGCC AAATCACGAG ATGCATAAGA ATACCCCCAA GCCTCATTTT TCAGAGTTTT TCTAGAAGTT 000480 000481 TTATTACTTA GAGATGATTG ATTAAATTAT TGGCCATTGG TGACTGAACT CAGTCGCAGC CCCTCCCCTA AAGCTATCTG 000560 000561 GGGGCCCACC AACAGTTACC TCATTAGCAT AAACTCAGAT GTAGTCAGAA GGGGCTTGTT ATAGATAACA AAATACACTC 000640 000641 CTATGGCTCA GGAAATCTCA AGAGTTTTAG GAGCTCTGTG CCAGGAACCG GGGGACAAAG ACCAAAAGCA GGACGCTGGC 000720 000721 AGACACAGCG GGCCGTCCTG CGTGCCCACA CGTGGTGCCA TCAGCGCAGC ATTTATGGCC CCACATACTC CTGTATCCCC 000800 000801 ACCATTCTAG CCAGGTGCCT GGCTCACAGT GGTCGGCAAT GGTTTTTAAA ATGGATCAGT GAGTGTTTGC ATCTCTTATT 000880 000881 CTGGGCATAA ATTCATTCAG CACCTTGTAT GTCAGAGACT GCTGTAGGTG CTGAACACAG GGACCTGGGG AACAATGGTT 000960 000961 TATTTGATCC TTAGCATTTT CCAGCTACTG GGAAGACTCC ACCATTGGTG AGAACAGAAG CCCCACAGAC TCTTCTCTCT 001040 001041 GTCTGAGAGG TGAGGGAGTG GAGATTAGGG GTTCCAACTC CGCCTGGCTC AAATTCTGCC TCCACACTCC CCTGCACAAG 001120 001121 TTACTTAACT CGGTTTCTAC TTGCCTTAGT TTCTGCATTT ATAAAATGAG GTGAGAATAA TACTAATACC TCTTAGAATT 001200 001201 GATTCAAGGA GCAAATGAAC ACTTACAGCC TGTCATCAAT ACTAATAAAT ATAAACTGCC ATTACTTTTT CTCCTTTATA 001280 001281 ATATCCTTTA TGGGGTAAAA ATAAGAAGAT ATGTCT |
Predicted Small Protein
Name | NONHSAT107141_smProtein_1214:1297 |
Length | 28 |
Molecular weight | 3163.6838 |
Aromaticity | 0.222222222222 |
Instability index | 64.3074074074 |
Isoelectric point | 6.48699951172 |
Runs | 6 |
Runs residual | 0.0155662909286 |
Runs probability | 0.0228316551846 |
Amino acid sequence | MNTYSLSSILININCHYFFSFIISFMG |
Secondary structure | LLLLHHHHHHHHLLLHHHHHHEEELLL |
PRMN | LLLLLLLHHHHHHHHHHHHHHHHHHLL |
PiMo | oooooooTTTTTTTTTTTTTTTTTTii |