NONHSAT107419
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT107419 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
4899 nt |
Genomic location |
chr6+:4395892..4406503 |
Exon number |
14 |
Exons |
4395892..4396201,4396599..4397931,4399466..4399769,4400025..4400116,4400384..4400521,4401030..4401168,4401250..4401464,4401562..4401936,4402442..4402570,4402757..4403005,4403126..4403388,4404826..4405130,4405340..4405462,4405580..4406503 |
Genome context |
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Sequence |
000001 TTCTATTGAA TAACAGGGAA ATATCTTCAT AGCTCTTGGG GTAGACAAAT ATTTCTCTAG CAGGACATGC AAAGAACAGT 000080
000081 GACCATAAAG GAAAGTGATA ATTTGAACTA TGTTAAAATT AAGAACTTCT GATGAACAAA AGGCACCACT GGGGAGAGAT 000160 000161 TGAAAAAGCA AGCCACAGGA TGGGAGAAGA CATTTGTGAT ACATATATCC AACAAAAGTT CTGTTGAATA TATAAAGAAC 000240 000241 TCCTGTGGAA TATATATATA TATATTCATT CCTTATATAT TCTGTTGAGT ATATAAAGAA CTCCTAGAAT ATGCACCAAA 000320 000321 AGAATGTACC TCCAAGAAAG CTCAGAGAAG CATTCATGGA GCAAATAATA AATATAATTA TATTCACTAT AATTATCTAA 000400 000401 ACATTATAAA TATAAATATT ATATTGTTTT CATTATCACC CCAAAATGAA AACAAACTCC ATGCATTCAT CAACAATAGA 000480 000481 ATGGATAAAT AAACTGTAAT ATATTCATGT AATGGAATAC TACACTGTGA TGAAAAGGAA CAAACTACTG TTACTATGAC 000560 000561 ACGGGGGGAT CTCTCAAACG TGACATTGGA CAAAAGAGAC CAGGCACAGA ATAGTACACA TACAATTCCA TTTATATGAA 000640 000641 GTTCAAAAAC AGGTAAAACT TACTCCTATG GTGCTAGAAA TAAGGATCAT AGTGTCATTT TGGGGATGGG TGGGGGTGAA 000720 000721 TTGGAGGGGC GCATGCAGGG TTCTTGGGGT ACTGATAATA TTCTGTCTTC TAATCTGGGA TGGATTACAC AGGAATGTTT 000800 000801 GCTTTGTGAA AATTCACTGA GCTGTGTGTT TAGTATTTGT GTACTTTTCT ATAGTATATA CCTCAATTAA AAATCTGTCT 000880 000881 AAAATTGGTG CACGACAATG TGAATGTACT TAACACTATT GAACTATATT CTTAAAACTG TTAAAATGAT CAATTGTATG 000960 000961 TTACATGTAT TTTATCAAAA CTATAAAAAG ATTTTTAAAA GAATGAACCA ACTTCACTGA TACCTTGATT TGACTTCTGG 001040 001041 CCTCCAGGGT CATGCGATGC AGCCATATTT ACTTCCAGTG AGTTCCCAAA TCAGTATTTT TTAGGCTCAA CTTAGTTTCT 001120 001121 TATGTATGTA ACATCTGCCA CCAAAAGTAA ATATTTTCTA ACTGGAAAAA AATAAATTTA AATAAAGGAG TTTCCCTGCA 001200 001201 TACTCTAGTG CTAATAGGAA AAAATACGGC AGTCCATCAG AGCTCACCAA GCTCGGTGAT TGGATCAACT CTGCCAGAGT 001280 001281 GTGAAATCAA GCAAGTAGAC TTAAAATCTC AGCTTCTCCC TCCCTCTGTG CCGACAGGCC CCTGGAGGGA AGTTCAGCTG 001360 001361 GACGAAGTTC ACAGGCCTGG GGATGCCTAC TGAGACAAAG CCCTTGCCAG CTGTTGTTTT CCTCACCCTC ATAGTGTAGG 001440 001441 AACTGAAGCC AGGGCTGACC TCAGCAGCTG TCCCCACAGA TCATGTCTAG AGCACACTAA AGGGTTGGAC CAACCCCAGA 001520 001521 TCACAGACAG CTCCACAAGG TCACAGTTCC AGCCCTGCAA CTGACCTCAC CAGCAGCATT GTTTAGAGCA CTCAGCATTG 001600 001601 TTTGCAAGAA GTTTGTCTAA AGTTTGTCGT GTAACCGTGC TCACACTGAA GTCATGATCT GCCGGCCCTG AGCCTCTGCA 001680 001681 TCTCAGTTTC TTCGCATGGA AAACAGGACT AACAACACTC AGTCCCCACT GCTGTCATGA GGATGGAACA CTCAAGGAGA 001760 001761 ACTGCACAGT GTGGCTCAGC CTCACGCTTT GTTTGCTTAT CAGTTTTGAT TCTGCAGGGC TCTTCAGGAC CACAGCCCTG 001840 001841 TCCCTTCTTC CAGTCTGTAT CAGCATCTGA TCTCTCAGGG TGGGTCTAGG TCTTCTTTAA TAAATCCATC CAGCTGAGCT 001920 001921 TTCCATCCAC GAGCAAGAAG GGACGCTCAC CAGACACTGG CAAGCACTGA GTTTGTCCCC GGCCCATGTC ACCTTCACCA 002000 002001 TCCTTTATCT TGTAGGAACA CATTGAGAGC CAGAGTCTGA AGGAATGTGC TGCTCAAAGA GCTGAAGACA GAACTCATTT 002080 002081 GAAGCTTGCA AATGCCTTAG TCTTTAAAGA ATTCACTAGA GCCAATGCAA GGCTGTCCCT ATCCAGCCTG TGTGCTCCAT 002160 002161 CCTGGTCTCA TGAGTAGGAA AGGAGCTAGT CACAGATCCT GGAGCTCTGG GGAATTTCTT CTAGATACAG AGCTTTGGGG 002240 002241 AGCAGGCTAG AGGAAGCCAC TGAGGCCCAC ACGCAGCCTC TGCTCCTGGG AGAGCCCTGA AGGGCCATGA GATGCACCAC 002320 002321 ATCAGGGCAG TCCCCATCCT CAGAGAAGGC TACACAACTT GACAGTTTCT GTGCCTGGGT CTGTGCTAGC CCTTTAGCCT 002400 002401 GGGGTGCCAC CCACTCCACC TTCCAATGAT TAAACCCCTC TTTCCCTTCA AGGTACTGTA AATGCTCCTT TTGTGATGCC 002480 002481 CCTGGAGCTT CTCCCATTGC AGTCCTATAC CATGTTACTT GCATGTTGCT GCATTTACGA ATTGCCTGGA GCACAGAAGT 002560 002561 CACGGTACCA GTTGTTTTGC ATAAGAATTC CATTTAATCC TCATTGCTCG CTTCATTAGG CAGGTATTGA TATACCCATT 002640 002641 TTACAGAAGA GCTTCACCAA GTAAAGGCAG AGGGCTAGAA TTAAGATTTA AACTTGAGTC TGACTCCAAA GCCCATGCTC 002720 002721 TTGCAATGAC CATGTTATGA ATCTTATATT AATCTTTGTT TGGTCTTATG ATCTGGCACG GTGCCTTGTA CGTAAGCAAT 002800 002801 TCTCAATAAA TGTTTGCAGA GTGCAATGTG TCATCTCAGA GTGTTGAAGG AAAGCAAACC AGCGTCTCAA GTAATTTAGA 002880 002881 CTTTGGCATA ACTTTCTGAA AGGGACACGC CTGCCAGCTG CCGCCGACCA CCCCGCCGAC CCTGTTTCTG TATGTCATAT 002960 002961 GGTGGCTGGG AGCCACGGGC CCTCTCCAAG TCCATCCACT TAGGATTTCC TCCTCCGTCA AACTCAGAGG CTTTGGCCAT 003040 003041 TCCTGATGTT TACTCATTCA CTGCCAATCC CACACGCCTC TATGCTGCTC TCTTCCACAA GCATTTGGCT CTTCATTTCA 003120 003121 GAATTTCCGC TGAGTCATAG CTGGAGCAGG CAGTGAGGGT GTCCCTTCAG CTCTCTAAAT TTACCTCCCT GAGCTTGATT 003200 003201 TCCCATAGTG GCCAGTTGAC CTTGACCAGA TTGACTTCAG AGAAGCCAGC TGTAATTAAG CAGAGGCAGA AATCTCCAAG 003280 003281 GAGGCAGCCG CATGGAGGCG TGACATGTGA CCATGACTTT CGGCTGGAGG TGGGGGTCAT GTGCACGTGG CCTGGGGCTT 003360 003361 AGCTCTCACC CTGCTACTCA CTCAGAATTC TCCTCTGGGT TTGGAGGTCT GTGAGCAAGA TGAAAAAACA CAGAATTCTG 003440 003441 TTATTCTGTT CCTCGTAGTG TAAGCATTCT TTTTCTTGGG TTCTTTTTTA GGAACAGAAC AAAATTAAAA GTAAAGGGAG 003520 003521 CCAAAAGCAG CAACACCCAG GGCTGAAAGT ATTGAAAAGG CCCATGGGCA GCCAGCCAGC AAAAAGAAGA AGCTGAAACA 003600 003601 TCCCACAGCA GGGAATTGCT ATGTATGTAA GCCCCATTTC AAGAACAACT AATACAGAAA AATCCAAATC TTAAAACCTA 003680 003681 CAAATTAGTG CACGAGTACT ACAACTGATG TGCCTTACAA ACAGATTTTT ACTTAATAAA CAGACTCTGT GAGATCTTTG 003760 003761 GCCAATGGTT ATTCCTTTGT ATGGCTTCTT GAAATTCCCT GAGAAATTAA AGAAAGTGAT GGACCCCTTT TCCAGAAAAT 003840 003841 TGTATTCACA CATGAGACCC CATCTCAAAA AATCAATTAT TTATTAATTA AGAAAAGAAA TGTAATTCCT TTCTTCTATT 003920 003921 AGATTACGAC CTATAAGAAA GAATAGTAAA CACTACAAAT CTGACTGTAT TATGGACACT CTAGGTGGAG CCAAGATAGC 004000 004001 CGACTAGAAA CAGCGGCAAT CAAAGGCTCC TATGAAAAAG AACCATAATT GGTGCGTAAA TCCTTCATGG GCAACCAAGC 004080 004081 TACCCAGGTT CTCTCATCAG GACTGACTTA GGCACCTGAT GTGATCCATG ATAAGGAAGG AAGAGCAGTG GAGTGTGGCA 004160 004161 GCCACCTAAG AGCCACACGG GGCAGGGGAG TTCCACCCCC AGCAAAGGGA GGCGGTGAGT GAGCGTGCTA CCCAGCCGGG 004240 004241 GAAACCGTGC TTTTTACACA GAACTGTGCA ACCTACGGAT TGGAAGATCC CACTGGCAAA CCCATGCCAC CGGGGCCTAG 004320 004321 GGTCCCAAAC TTGGAGCCGC GCACATTCTC AACAGCCCCT CACTGGAATC TGCTTAAGCC TGCCAAGCTT CCGGGGGGAG 004400 004401 GGGTGACCAA CACCACAGCT GCAGCTGCCT GCTGCCTAAG CCATTTGAGC TCCTTGGGGT AGAGGCAGCA GCCAGCACTG 004480 004481 GGACTCATAA CTGCCTAACA CACTAAGCTC CCTGAGCGGG GGAAGGGCAG AAGCCATTTC TATAGTCAGG CCGCACTTTT 004560 004561 CTCCTGCTGG AGTCAGGGAG GCACCACGGC TTGGTCCCCA AGAGGTGTCC CCCACAGCCC AACATACCAG CTGTGGCAGA 004640 004641 CTGTGGCCAG AGCGCCTCTT CAGGCCTGAC ACTGACACAT CCTTCCTCAC TGGGCAGGGC TTCCCTGCAG GAACTCCAAC 004720 004721 AACTGCAGCC AGAGGCTCAG GGACAGAACC GAGATCTCCC TGGGCCTGAG CCCCTAATGG GAGGGGTGGC CGCACCTCCA 004800 004801 TTACCAGGAG GAAAGGAAGA TTTAGCCTTT CCTCCTGGTA GTTCTGAGGA ATCTGGACAG CCCAGATGAA TGGGTTTCCC 004880 004881 CAAAGCGAAG CACACTCCC |
Predicted Small Protein
Name | NONHSAT107419_smProtein_2951:3139 |
Length | 63 |
Molecular weight | 6869.731 |
Aromaticity | 0.129032258065 |
Instability index | 44.6612903226 |
Isoelectric point | 8.21502685547 |
Runs | 11 |
Runs residual | 0.0237788018433 |
Runs probability | 0.013336866278 |
Amino acid sequence | MSYGGWEPRALSKSIHLGFPPPSNSEALAIPDVYSFTANPTRLYAALFHKHLALHFRISA ES |
Secondary structure | LLLLLLLLHHHLLLEELLLLLLLLLLLLLLLLHHHLLLLHHHHHHHHHHHHHHHLEEEEL LL |
PRMN | - |
PiMo | - |