NONHSAT115334
Revision as of 02:03, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT115334 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1968 nt |
Genomic location |
chr6-:143342826..143359901 |
Exon number |
5 |
Exons |
143342826..143343093,143345615..143346340,143358126..143358719,143359426..143359449,143359545..143359901 |
Genome context |
|
Sequence |
000001 TGTTATGGTA AGAAGGAAGA AGGAAGGAAG GAAAGAGCAA AAGGAAGGAA AGAAGGAAAG AGTGAAAGGG AAGGGAGGAA 000080
000081 AGAAACAAAA AAAATTATCA ATGCAAGTGA ATATGTCTGT GTACATATCC ATGAATACAT ACATATATTT CAAAATTCTG 000160 000161 ACCATGGAGA GGACCTAGGT GCAATGACAC CCCAGTAGCA ATTAATAACA AGTATGTAGG TTCCAATTTC CATAACAAAC 000240 000241 AACAAGGACT CCTTGTAAAA GTGGATGATT CAAGGATGGA GGTAGAGAAA TTTCAAGATA AGCCTGGAAC GTTGGATAAT 000320 000321 AATGAACTGT GGTTTGAATG CTGGTATTTA TCGCTGTGGT TTCAACTTGC TTAACTTGCT CAATGGAATG CTATCTCTAG 000400 000401 AGTACTGAAA GAAACTAAAG GCCAACGTGT GAAAAACAAT CTTCAGAAAT GAACGTTAAA TGATGACATT TTCAAACAAA 000480 000481 CAAGCAACAA AAAGAAGCAA AAAGTAAACA AAAAACAAAA ATTCACATAA TTTATTGCTA GGAGTTTTAC ACTGAAATGC 000560 000561 TGAAGGGATT TCTACTAGCA AAAGTAAAAA TGATCTCATT TGAAAAGATG GAAATTCAAG GAGGGAATGA AGAATACTGG 000640 000641 ATGGGTAAAT GTGTTGGTAA CTGTAAATGA ATACTGACTA CACAAAATTA TGTTGAATAA CTGAAAGATG AAAACACAAT 000720 000721 CACTTGAAGG AGAAATGTAT GGTCAAACTG CATGCAGGAA AAACTTCTAT AAAAGAGTTA CTTCATGCTC TGGGTTGGCA 000800 000801 GATACAATGA GCAGGAGTGC ATCAGAAGTA ATCAAGAAGG TGATTAGTTG GTGTACTTCA GCAGGAGCAA CCAGATGAAT 000880 000881 TGGCTTCTCT ATATCCCCGT ATTAGCCACA AGCTAGGCAG CAGCCTGCAG GTGGGAGCAA TGCCTATGCA TGTATGGATC 000960 000961 AGTGTGCTAC ATACAGGCAT TTTTGTTATA GCAGCCTGAC TAGACTAAGA CATTGTAGTA TGTAAGCAAA ATGGGCTCAT 001040 001041 TTTTATATAT GACAGAGACA AAAAAACATA AAACATATTA CTGGAAAGAT ACTAAAGCAC TCAGATAAAA TGAAATGGAA 001120 001121 ATGCTATTTT CTCCATGAGA AAACAAAAAA GAAGAGGAAG ATAATAAGGT GCCTGATTTA AAAAAAAAAA AAAAACTTTT 001200 001201 ACTTTTGAAT AGTTTCAGAT TTACAAAAAA AAGTCGTGAT GATAGTACAG AAGGTGGCTA TATAACCTGT ACCCAGTTTC 001280 001281 TGTTATTGTT AACATACCAC ATCTCTATGA TTCATTTTTA ACAACTAGTG AATGGTTATT GACATATTTT AATTAACTAA 001360 001361 GACCAAACGT TATTCAAATA TTTTTACTTT TTACCTAATA ACCTCTTTCT GCCCCAGGAT CCAATTCAGG GTGTGTGACA 001440 001441 TTACATTTAG TCATCATGTC TTCTGATTTC AGTCTGTATA ATTCCCAGTT CCTCACAGCT GGGACTCCTG ACATCCCATA 001520 001521 TACAAGAGCA ACTCCACCCC TGTGTCAGGC CATATTTAAA CTGTGCTAAT CCCCCAGGCA GAAGCCTCAG TATCAAGTCC 001600 001601 CATTCTTAAT ATCAAGTCCC ATTAGGTTTG ACCCCATACT AAAAGCTACC AAGTTAGCCA GTCAGTCCCA AATTACAGGC 001680 001681 CTTCCATGTA CTCTGTTCCA CAGGTCACGT TGACAGCATG AACCTTCGAT GTGATGTGAG GAAAATGGCA TTCTACCTCT 001760 001761 GTGTTCTTCC TCCCCAAAAT TTGTAACCAC CATCTAATCA TGAGGAAAAC ATCATACAAG TCCAAATTGA GGAAGATTCT 001840 001841 ACAAAATGCC TGATTAATAT TCATCGAAAC TGTCAAGGTC ATCAAAAGCA AGGAAAGTCT GAGAAACTGC CACAGCCTAA 001920 001921 AGACAATCCA GGGAAACGTG ATGACTCAGT GGTATTCGGG GTGGGTTT |
Predicted Small Protein
Name | NONHSAT115334_smProtein_707:877 |
Length | 57 |
Molecular weight | 6156.0167 |
Aromaticity | 0.0714285714286 |
Instability index | 58.4430357143 |
Isoelectric point | 9.50701904297 |
Runs | 11 |
Runs residual | 0.0431303669009 |
Runs probability | 0.0496459025871 |
Amino acid sequence | MKTQSLEGEMYGQTACRKNFYKRVTSCSGLADTMSRSASEVIKKVISWCTSAGATR |
Secondary structure | LLLLLLLEEEELEELLLLLEEEEEELLLHHHHHHLLLHHHHHHHHHHHHHLLLLLL |
PRMN | - |
PiMo | - |