NONHSAT138214
Revision as of 02:49, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT138214 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3676 nt |
Genomic location |
chrX+:112285955..112763885 |
Exon number |
4 |
Exons |
112285955..112286033,112316311..112316346,112355178..112355293,112760444..112763885 |
Genome context |
|
Sequence |
000001 ATTTTGTCTA TTTTTGCTTT GGTTACCTGT GCTTGTGGGG TATTTATTAC TCAAGAAATC TTTGCCTAGT CCAAAGTCCT 000080
000081 GATGTTTTTT GCACAAGGTA GAAGATGGGT GCATCTGGCT TCCGAGGCGA TCGGGCAGTG TCAGTCTTCA GCTGCTAAGC 000160 000161 CGAGAAGATC TGGGAAGGAG TCAGTCGGAG AGCCTTGGGC CAGAGTTCCA GGGGCTCTGG AAGTGGCTGC CAGTGAGCTA 000240 000241 ATACTCTGCT TGAGATTCAT TAAGTCAAAG ACTGACATTT CCTCTGACCA CAGACTCGAC TTCAGTCTGC AGATATTATC 000320 000321 CTGCAATTCA GCACACATTG CTATCTGCTC ATCGTGGAGG AAAAGCAAAT TGCAGATATT TTACTCTGCC AAATCATTAT 000400 000401 GTGCTTAGGA TATTCAAGGT TAGAAAAAGC TAAGTGACAT GTACTTTTAG ATACTTGGCA TTGTAATTAC AATGTAGTGC 000480 000481 AAATCAGCAA GTATTTATTG GGTACTTATG TGTCTAGCAT TGTAATCATG GCTTTTCCTT ACACAACACT TGACATAGCC 000560 000561 AGATGGATAC AAGAGATTTT CTGGGCAGAA TTTCTTCTGA AATGTTCCCT CCACTGGCCC ATTATTTTAC TATTGGAGCC 000640 000641 TTTTTTTTTT GGATCTAAAA AAATGTTGGT TTTCAGATTG AGGGTAATCA AGATACCCTG GTTATGGCAA TTAGAGCAAG 000720 000721 CATTGTAGTT GTCATTGGCA GGAAACAAGA GTCAGAATTG GAATTGAGAT GAGTATCAGG AGTGAGAGAA AGTTGTAGTT 000800 000801 TGAGAGAGAA GATGTATATT AAATGAGAAG GGAGAGAAGG TAGAGGTCAT CTCTGACTAA CCTTCTCTAC TTCTTAGTTT 000880 000881 TGCTAATAAT CTGTCTTTCA TGTGGAACAG GGAAGCTCTA CCTACCTAAA TTAGTATGAT GTTGTGTTAA GGAGTGTAAA 000960 000961 CTTACAAAAA GAAGCAGAGC CAGTTATGTC CAAGTTGAAG CAAAAAAGTA CATTTCACTG TTACAGACTT CTTTGATTAT 001040 001041 CCAAGCCACT GCTTTTTTTC TTTTAAAATG GATAATGTTG AAAAGTTCAG AATCTAGCAA ATTTGTGAAA TGTCACTTTG 001120 001121 GGTAACATGT GCTAAATAAT TCAGAGGTAC AATTAACAAA ATATCTATAT CACAGTGATT GAATGTTCTC AACTAGTTTG 001200 001201 TCCCTTTTGC TTCTCTCTCC TTCTGGCAAG TCTTTTATAA GTTGGAACAC TGAAATTGCA TGCAGATTTT AAAGACATTG 001280 001281 ATGTATAATT CAATAGCAAC TCATATTGTT TTTAAACATC AAGGTTTCAC TACTGATTTT CTTCAGAGAG ATTTCATTTC 001360 001361 CACATTTGTC ATTCATAGAG AAGACACAAG GCGACCTCTT TTGAGGTGAT TTTCATGAGC AAATGATAGA AAACATGAAG 001440 001441 GAAAAATATT ATTTCTTGTG TTTTATTTGT AATACCCTAT GTATCTGCCT GCACTCTAAC AGTTGACGAC ACAAGAAAGG 001520 001521 AAGTTTGATG AGAAAGATGT AAAATATCAA GATGATTTTT CATCATAATA TGTAGTCAGA ATCTTGAGAA TTGGGAGGAA 001600 001601 AGGTAGAGAA GGCCAGCAAG ACAGCATGTT CATGAGTATG AAGGTGGGCT CAGAGTGAAC CAGGTATTCA AGTATTTTAT 001680 001681 AATACCACGC CACCACCTTC TCGGATGATG TTATACGGAT AGTGAGAGAT TCATTACTAT TTCTGAGTTG GAAAGTAGAC 001760 001761 CAGCAATCCT GTAGTATAAC ATTTCATTTC AAATCATTCA AAGTGGCTTG AAATTATACA CTGGCTGATT TTAAAAGGTG 001840 001841 GGTTAGAATC ATAACTTATT TGTTTTAAAG AAAACTATGT CATCTGCTTG CATAATGATT TTTCACTTAA TGTTTTATTC 001920 001921 AGTCTTTCTA TATAATTGAG CCTAATTGTT CTCTAATACT GAAAGGACTC AGCTTTATAT GCAGCCATCC CTATTTTTGA 002000 002001 TATTTCTATG AAGGTGCTTT TGAATAATAA TGAATACGCC TTTTAGATTT GTTGTAAGTG TTTTATATTC CAGGACTGCT 002080 002081 ACTTATACTT ACTTGTATTC TTGGTTTATA ACATGTAGTA CTCAGGAGAA TAAACCCTTG GGAATGCTAT GCAATAAGGA 002160 002161 TTCTAAGAGA CACTTATGTC CTATTTATTT TTATAGTTTC TGTAAGAAAG TGCTTATTGG GCAGAAACAA CCAGGATAGC 002240 002241 TTACAAATAT GAATGCCTGG AAAGATCCCC AGGGTCTTCA TTATTTATGT TGTTTGATAA GCACATTCTA ATTGTTGATA 002320 002321 GGTTAAGGCC AGTGTTCTTA GACTGATGTT CTCAAGGTTT TGTTTCTTCT ACCTTAAGAG TTAAAACATT CAAGAGAATT 002400 002401 AATAGCATGT ATTGAGCAAT TACTACACCA GAGATACAAA GGATGGGTAA TTAGAGAGCA AGAAGAAGTA TTTGAATTTG 002480 002481 GAATAAACAG TACAAATAAG AGAGACAGAG TGCAGGATAT GTTGTACATC AGTGTTTGCT TGAAATGGAG GAAGACTTTC 002560 002561 CTGCAGGATG AAAAATGGAG AATGGCTAGA AAGGTTAGAG TTAGATTGTA AAAAAGCCTG AATGTTAAAC TAAGCAATTT 002640 002641 GTTTTACCTT ATAGGCAGTG GGGAGACATG GAGTACCATC AGTAGTTCAC TTATTTTCAG AGTAGAAGCA TTTTGGCATT 002720 002721 CTATTATCTA TTACTTAATA TAGAATGCAG ACATTTATTT GGAAATGCAA TAGTCATTTA ACTCTTAGCA TGACAGCTCA 002800 002801 TGTGATATAC AGTATTACAT TTTCCCTATA TTAAATACTA TACGAAGAAT AAAATCGATT TATATTTCAA CTCTCTTTTT 002880 002881 ACTTGGAGAT GGGGGTGAAT GTTGTTGATC TTCATCTTTA GGCAGTAATA CTGATCATTA TCATTACCTT TATTAAATTC 002960 002961 CAACAAAGTG CAAAGTGTAA AACATACAAC TTGGCAAGGG AGTCCTTCTC ATGGTTGAAT AATTGGAGAT ATTTCAAGGT 003040 003041 GAATTATCAA ACTATTAACC TCTTTGGATT TTTCTTTTGG TCAGAATCAT TAAAGGGACT GGTATTTGGG TGAGATTTGA 003120 003121 ACTCTGTGAG GTCAGAAACT ATGACATACT TACTCTACTA TTGACAATAT CCAGCACATA ATTATATGCC TGGCACATAT 003200 003201 TTAAGAGACT AAAAGGAACT TATTGAGTGA ATGAGTGAAT GAATGATATT CTGGACTTCT GTGATTTTTC CTAATGTGAT 003280 003281 TTCACCCCCC TTTCACTTAA GTCACCTATT GGCACTTGTA CATTGTTATC ACTAAAATTT ATCCACTCTT AAGACCTGGT 003360 003361 AATTAATGCA ACACATGATC ATGAATGGAT CTCAGGCAAG AAGGAGCCAT TAGGAGGAAA GTCTTAGCTA GGTGTGGTGG 003440 003441 CACACAACTG TAGTCCCAGG TACTGGGGAT GCTGAGGTGG GAGGATTGCT TGAGCCTGGA AAGTCAAGGA TGCAGTGAGC 003520 003521 CGTGATAGTG ATATTCGAAT AACATCTTTA GATAATAGAA TTATATCAAT GTTAATTTTG TGACATTGAT CATTGTTCTT 003600 003601 TGATTATGTA AGATGTTAAC AGAATTTTTG CAGAATCTGG ATAAAGGTTA CACAATAATT ATTTTATAAT TTTTGC |
Predicted Small Protein
Name | NONHSAT138214_smProtein_527:727 |
Length | 67 |
Molecular weight | 8096.7486 |
Aromaticity | 0.19696969697 |
Instability index | 45.4075757576 |
Isoelectric point | 9.03363037109 |
Runs | 12 |
Runs residual | 0.0312103066594 |
Runs probability | 0.0539436495319 |
Amino acid sequence | MAFPYTTLDIARWIQEIFWAEFLLKCSLHWPIILLLEPFFFGSKKMLVFRLRVIKIPWLW QLEQAL |
Secondary structure | LLLLLLHHHHHHHHHHHHHHHHHHHHLLLLLHHHHHLLLLLLLHHHEEEHHHHEELHHHH HHHHHL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLL LLLLLL |
PiMo | oooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTTTTTTTiiiiiiiiiiii iiiiii |