NONHSAT122186
Revision as of 06:41, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT122186 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
6213 nt |
Genomic location |
chr7+:97881470..97887682 |
Exon number |
1 |
Exons |
97881470..97887682 |
Genome context |
|
Sequence |
000001 TGGTAGGTCC TCGGCGTCCG GGAGGAGCGG ACCGGCCCTC CCGGGGACCG GGCAAGAGGG TGGGCCGGAA GCGGCATCAG 000080
000081 GCCCCGTGCC CATTGGCCAG CCTCGCCAGG ACGCTGCGAC CTGGGACGTG CGATTGGCTG CGGTGCGCCG CGTCGGTGCT 000160 000161 GGCTTCGAGG TCGCGCGCCC GCCCACTTCC GGGGTCGCGC CAGGTCAGGA GTCCAGAGTC GGCTGAAGCG AGTTGCCGCG 000240 000241 TTCTCTCTGG CGGCGCGACA CCGGCCCGTG GACCGCCCGG CCGCCCTCCA GGACCCGGTC TGCAGGAGCG GAGAGGGCGG 000320 000321 TGTGGACACC GCCTGCAGGC GAGGAGAAGG GGTGGCGGAG AGGGTACCTG GGTGCGTGGC TGTGCGGCGT CAGGAGGAGC 000400 000401 AGGGTGTGGG CGCCCGGCCT GGGGCGTGGA GAGGACGCAG GGAACAGGTG TCTTCCTGGT ATCCATCGAA CTGAAACGTA 000480 000481 GCCCTTGAGC ACACACTACA CTTAAAGCTT TACTCTTTCG AGGAGGAGTC CTGGAAGCAT ATGTGATTTT GTGACTATAG 000560 000561 CATGGTGTGG TGTCAGTAAC AGGCCCTGGA TTGCTCAAAC TCTATTGTCA GTGACAAAAC CCAGTGTAAG CTGGCCtaat 000640 000641 atattaatag taatatgcga gtcctcccgg ggtggcgggc actgacgtaa gtgctttact tgggtcttct catttcatcc 000720 000721 tcccagcaac ccaaagagct ggcggcgtca ttcccatttt acaaatgcga acacgggctc agagatggag cgactcacgt 000800 000801 tgtaagcgat ggaactggga tttgaaAACA CTGTATCCCG CCTGGCAGAA AACTGGCAAG GTTAGGATGG AGAAAGGAGA 000880 000881 AAAAAGAAAG ATGTCggcca ggtgcggcgg ttcatacctg taatcccagc actttgggag gccaaggcgg gcggatcact 000960 000961 tgaggtcagg ggtttgagac cagcctggcc aagatggtga aaccccgtct ctagtaaaaa tgcaaaatta gccaggggtg 001040 001041 gtggcgcatg cctgtaatct cagctactcg ggagactgag gcaggaaaat cgcttgaact ggggaggtgg aggttgcagt 001120 001121 gagctgagat cgtgccactg tgccaccgca ctacagcctg ggcgacaaga gcaaaactcc ttctcaaaaa agaaaaaaaa 001200 001201 GGGCATCTGA TGGAAGGCTA GATACTACCC GACATTGAGC TAAACCAATG TCACCTGGTT GGACCTAGGG ACCTATTCCT 001280 001281 GCTCCCCCTC TAGTTCTGTC TCATTTCTGG GGTTGCACAC AGGCTTTTCC TGGGCCTTCA TGTTTGGGGA AGCCCCACAC 001360 001361 AGGCCAGCTC CAGTGGAAGA AAACGCCCCC AGAAGCCTCT TGTTCACCCC GGATGGCTCT GTGGAGTCCT GTGTCTGACC 001440 001441 CTGACTTTAG CTTGGGCCTG AGGGACTGGC ATTTGTGGAC TTGGTCTGGA GATGTGGGCA GAGCCCCCCT CAAGCATAAG 001520 001521 GGCTCAGCCA GGCACAGGGG GTGGCTCCTC AGAGGAAGAT CAGGGTGCTA TTAGCAGAAG GACGATGAGT Gggccgggcg 001600 001601 cagtggttca cgcctgtaat cccagccctt tgggaggccg aggcgggtgg atcatgaggt caggagatga gaccatcctg 001680 001681 gctaacatgg tgaaacaccg tctctactaa aaacacaaaa aattagccgg gcgtggtggc gggcgcctgt agtcccagct 001760 001761 actcgggagg ctgaggcagg ataatgaggt gaacccagga ggcggagctt gcagtgagct gagattgtgc cactacactc 001840 001841 cagcctgggc aacagagcaa aactctgtct caaaaaaaaa aaaaaaaaaa aaaaaGGAGG ATGAGTGGTC GCTAGACTGC 001920 001921 TGgagaaaca gtctagaggt agggagccct gggttctgtc ctgcctgtga cactctgtag ccatttatct cctctttagc 002000 002001 tttagtttcc acattaaaag aggcattgaa aaaaaatgaa aaagaggcat tgaattagga gctttctgtg gccccttgca 002080 002081 gttttCATGT GTGGTGACAA AGTTCAATAT AGTTTTCCTG AATTCAGGGG CTTGGGGACC CATGTCCCCC TATCCCGAGt 002160 002161 tctttttttt tttttttttt tttgagaggg agtctcactc tgtcacccag gctgcagtgc agtggtgaga tctcagctca 002240 002241 ctgcaacctc cacctcccag gttcaagcga ttctcctttc tcagcctcct gagtagctgg gactacaggt gtgtgccacc 002320 002321 acgccaggct aattttttta tttttagtag agacaggatc tcaccatgtt ggccaggctg gtcttgaact cctgacctca 002400 002401 ggtaatccac ccatctcagc ctcccaaagt gctgggatta taggcgtgag ccagcatgcc cggccaaaag tttgctttct 002480 002481 tttgagtctg tgatcagcct ttcactgaat acacaattta catgtgagag tgggtagagg aatagtcaca tatgccttac 002560 002561 tcactgtctg gctcagtgaa tctgcatttt gtataaacaa taggacagag gaagaaatca catatgcatt tgtcttcagt 002640 002641 gagcggaggg ctgactttct gcattgtacc tgtgaagata agctatcaat ttacattgcc agggaaaatt catcagaact 002720 002721 gttttagggc aaagatcttg aggcccgaaa ggaatttgct tgtggagaaa ttgtgagggg ggtatgtagc tcttttgaac 002800 002801 tttctagcta tcttattgaa gaataaaacg ggaggcaggt ttgtctgatg cgaccctcag cttgactttt ctctttggcg 002880 002881 tagtgatctt ggggtcccga gatttatttt cctttcacaG TAGGATACAT TGATCAGGTC AGTGCCACAG TACAAGGgtc 002960 002961 agaagtgttt gaacccgagc gactccatct tgaacagggg ctgggtaaaa tgaggctgag aactgctggg ctccatcccc 003040 003041 aggaggttgg gcattcttgg tcacaggatg aaataggagg tcagcaggtt tggtatcaca agatacaggt cacaaagccc 003120 003121 ctgctgatag aagaggatgc ggtaaagaag ccagccaaaa ccacgatggt gatgaaagtg acttctggtt gtcctcaccg 003200 003201 ctcattatac tctaattata atacattagc atgctaaaag acactcctac cggtgctgtg acagtttata gatgccatgg 003280 003281 caacgtcagg aagttaccct atatggtctg aaaaggaggg gaaaccttag ttccaggaat tgccctctgc tttcctggaa 003360 003361 aactcatgaa taatccaccc cttgtttacc atagaaccaa gaaataacta taagtatact cagtccagca gctcatgctg 003440 003441 ctgctctggc tgtggagtag tcattctttt attcctttac tttcttttat tttttattta ttattattat tattatctta 003520 003521 tttgagatgg agtctctgtc gcccaggctg gagtgcagtg gcgcggtctt ggctcactgc aacctccgcc tcctgggttc 003600 003601 aagtgattct cctgcctcag cctcctgagt agctgggatt acaggcgcat gccagcatgc ccggctgatt tttatatttt 003680 003681 taatagagat ggggtttcac catgttggcc aggctggcct cgaactcctg acctcaggtg atccgctcac ctcggcctcc 003760 003761 caaagtgctg ggattacagg cgtgagccac cacgcctggc ctggagtagt cttttattcc tttactttat tatcattatt 003840 003841 atttttgaga tagaatcttg ctctgttgcc cagactggag tgcagtggca ctatctcagc tcactgcaac ctctacctcc 003920 003921 cggattcaag caattctcct gcctcaacct cctgagtagc tgggattaca ggtgcacgcc accacaccca gctaattttt 004000 004001 gtatttttag tagagacgtg gtttcaccat gttggccagg atgttcttga actcttgacc tcaagtgatc cgcccacctt 004080 004081 ggcttcccaa agtgctggga ttacaggtgt aaaccactgc acccagcctg ttcatttact ttcttaataa gcttgctttc 004160 004161 actttatgga cttgccccaa actctttatt atgtgaggtc caagaaccct ctcttggggt ctggatcgag gcccctttgc 004240 004241 agtaTAACAA GGATCAGGAG TAGACAAAGA AAAGTCCAGG TCCCTGGCTC AACAGAATCT ACTCTCCAGC AAACAAGATA 004320 004321 AAACTTGCTA TCTCCCTTTA ATTGAAGTCC CTAATGTTTA ATGGAAGTCC CAGTAGGCAT CCATATGGTC TCTGTATTTA 004400 004401 CCAGCGGCTG GAAGCTCGCT TTGTACGTTA CTCTGCACAA CACCACATGA CTGCTCCTGA CAGTAATTTG AGGAGCTTCT 004480 004481 GGTGATGGTA AACTTGCACA GTATGTTCAA AACCAACCTA CAATCTGTGT TACGCCTGTA TGTTTCACAA GGAACATGTC 004560 004561 TGTATATTTC GACTCCAGAA ATATAATTTG TCAAACCAAT TATCGTACCT AAAATGTCTT GTGCTGTGTT TTATAATAAT 004640 004641 TTACGCAAAT GAGTTTCATT TCATGTAATT AACCTATTCC AGTGTGATGT TTCTCACCCC AACTTTGCCA GCTCTCTTTC 004720 004721 CAGCACAGAA ACAGATTCCG CTAACCATCG CCAAAGGCAG GACCTGTGAA CAGCTGAAGC ATCTCCTGGT CTCTGCTCTG 004800 004801 CTGAGCCTTC CATAGCAAAT CCCAGGCAGA CAGGGTCCTG AGGATTGATG GCACCTGAGC AGCAGTTGTG ACCTTCCGCA 004880 004881 ACATTCTCTT ATGCCTCTAT AAAAGCCAGT AATCTcccgg catgatggct catgcctata acgtcagagt tttggaaagc 004960 004961 ggaggtggga ggatcacttc aggtcaggag tttgagacca gcctgggcat caaagtgagc ctctatccct acaaaacatt 005040 005041 tttttaatta gccagatgtg gtagtgcgtg tctgtagtcc cagttactag ggaggctgag gcaagaggat cgcttaagcc 005120 005121 taggaggtcg aagctgcagc gacctgtgat tgcaccactg cactgcagcc taggtgatgg agcaagaccc tgtctcaaaa 005200 005201 gaaaaaagaa Gggccgggca tggtggctca ctcctgtaat cccagcagtt tgggaggccg aggcaggcag atcacgaggt 005280 005281 caggagattg agaccatcct ggccaacacg gtgaaaccct gtctctacta aaaataaaaa aaatcagctg ggcgtggtgg 005360 005361 cacgcgcctg tagtcccagc tactcggtag ggcgagacag gagaatcgct tgaacccggg aagcggaggt tgcagtgagc 005440 005441 cgatatcgcg ccactgcact ccagcctggg tgacaaggca agactctgtc tcaaaaaaaa aaaaaaaaag aaagaaaaaa 005520 005521 gaAGAAAGAa gaaaaagaaa caaatggtca ataaacttat gaagaagtgc tcaactacag cgataagcag gaaaatgcaa 005600 005601 attaaaccca caatgagttg ccTGCCAGAC AGGCTAAGGG AGTAGAAGTA CGAGCTGGTG CCATCACTGG GGAAATCAGT 005680 005681 GACATGACCT CATAGAGCTG AAGCTAAGAT TGTGCTGTGG CCCAGCAGTG ATTTAGGTGC TGTACGTACA CACCTTACCA 005760 005761 GCATTCTCTA TGTAACAACA GCcccaggtg tccatctgta gtggaatgca tgatcagtgt gatggagtca cattaggttg 005840 005841 ctgcaaaagg acttgtggtt ttggccatta aaagtaatga cagggtgggt gcgatggctc acaccagtta tcccaacgct 005920 005921 ttgggaggcc gaggtgggca gatcacttga ggtcaggagt ttgagaccag cctggccaaa atggcaaaac tctctgctca 006000 006001 aaatacaaaa attagctggg catggtggca cacacctgta atcccatcta ctcaggaggc tgaggcagga aaattgcttg 006080 006081 aacccaggag gtggaggttg cagtgagatg agatcatgca actacactcc agcctgggca acagagtgag actccgtctc 006160 006161 aaaaaaaaag aaaaaagaaa aaaagaaaaa aggccaggca tagtagctca cgc |
Predicted Small Protein
Name | NONHSAT122186_smProtein_3434:3631 |
Length | 66 |
Molecular weight | 7589.0149 |
Aromaticity | 0.169230769231 |
Instability index | 66.8847692308 |
Isoelectric point | 9.30059814453 |
Runs | 8 |
Runs residual | 0.0272115384615 |
Runs probability | 0.0308249425896 |
Amino acid sequence | MLLLWLWSSHSFIPLLSFIFYLLLLLLSYLRWSLCRPGWSAVARSWLTATSASWVQVILL PQPPE |
Secondary structure | LHHHHHHHHHLLHHHHHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHHHHHHHEEEL LLLLL |
PRMN | LLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLL LLLLL |
PiMo | ooooooooooTTTTTTTTTTTTTTTTTTTiiiiiiiiTTTTTTTTTTTTTTTTTTooooo ooooo |