NONHSAT122818
Revision as of 06:44, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT122818 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
7310 nt |
Genomic location |
chr7+:113109789..113124124 |
Exon number |
2 |
Exons |
113109789..113110137,113117164..113124124 |
Genome context |
|
Sequence |
000001 tacgggctga actgcatccc ccaaaattag tatgttgaag tcttaatccc aagcacatca caaaatgact atgtttggag 000080
000081 agagggcctt gaaagtgata actaaggtga aatgaagtcc tataagtagg ccctaatcca atctaactga tgttcttata 000160 000161 agaagagaag attagaacat agacaaccct gactgaggac atagaaaggc ggcggccact tgcaaaccaa ggaaggaggc 000240 000241 ctctgaaaag ttcaaacctt tcaggacctt gatcatggac ttctagcctc cagaactgtg aaaaaattaa tccatgttct 000320 000321 ttTTttatgc tttaagttct gggatacatT CCTTAATATA AAGACATACT TCCTTGGTAT TTTCTGTCTT TCTTATTCAC 000400 000401 TGGAAcagag tttcccatca agtgtgtgtt ctgtgagcat aagttctgtg agaggctctg tggggacaaa gtttaacttc 000480 000481 ataatcaaat aatttggaaa gcatagggta agtatagcct ctggaaaatc atattttacg ttgacaaatg ataaaaagct 000560 000561 ttatttttat cttttcacag taaaaagtta acttagttta acacattttt tttttccaaa gtctcttggc tatagatatt 000640 000641 atcatttttg gaatgtgtac tgacatcttc cagaacttgt attccttgga attcacttgg gTCAAGGCAA ACATAATACC 000720 000721 TTGATTTGGA AACCACTTGC AGCTATACTG TACAGCAGCT GAGAGAAGTA TTTTCTTTTA CATGCACTAA GGCTAGAATG 000800 000801 AAAATAGTTA TTTTGAGGTG CCCTGTGGTT GAATGGTCTT TTCCACAGAG TGTTGGATCT TTTTCTTTCA TCTCCTTGAG 000880 000881 CACCAATCCT TCTAGCTTTG CCAAACTCAG ACTCATTATG AGTACCCATG ATGCAATTAA AATGCAGTTT TAAATTAAAA 000960 000961 TGGTACTTTA ACGGATAATG GTACAGGTAC CTTATCCAAT AGTGTTGCTC ATGGAGTTGA GAATAATTTT TTCATCTGTC 001040 001041 TCACTAGCAG TTAAACCAGA CCATTTATCC ACAACTATGA CAGCATAATT TCCAGGTCCT ATTTTACTCA TGAATTGCTG 001120 001121 GAAGATGTGT TCCAAAAGAG AGTGTATCCT AGCAATTAAA TAAATGATAG ATTGTTTCTG TGAATTTACT GAAATTAGGG 001200 001201 ATAATAAATT CAGCAAAGCT TTTATCAACA AAATGTAACT GATTAGAACA ATCAATTACC TAGATTTTTT TCCTTCTGAA 001280 001281 ATTATACTTA GGGGAATCAG AGACCGAATA TAACAAAATA AATTGATATC AGGAAAATCA ACTTCAGAAA ATTAATGTTC 001360 001361 AGTTCAGGTA CACCCAAATT TTTAATATTT TTTACCTGTA GAACGGTGGC ATAAAACTAG AATAGAATCA TTTTTATTAA 001440 001441 TGATAATGTA ATataaaaac agcatttctt aaatacttgc tataagtcaa gtactattct gagtactcta catatattta 001520 001521 attctcacaa tgaatatatg aggtatatgc tattacattt attgaacaca atgagaaact aaaggttaga gatataaggt 001600 001601 aacttgccca aggtcacata ctttataagt agtaaagact agaattttaa tccaggcatc ctgacATGAA GATGCATGAC 001680 001681 CCATTTAGAA CTAGTATTAG TTCATATTGT TAAGTCAATA GGAACAACTG GATTAATTAT ACAATACTTT CATACGACTG 001760 001761 GTAGGTTCTT GAAATCAAGC ATGCATAATT TCTAATTTTT ATGCACAGAC CAGATCCCAG GAATTGACAT TTTTAACAAG 001840 001841 CACAACCCCT CTTCCTCACT CTCAGTATTT TATTGCAGGT AGTTCACAGT CAGTACTTTG AGAAACACTT GTAAAGTAAT 001920 001921 GTAAGTTCTG AGAGATTGAA GAACACAGAA GGCAAATATT TTAAGAATTT GAAAGCTCTA ATTAAAATGT TTACACTTTG 002000 002001 CAGTCTCACT TTATCTGCTC TTTTAAATAT TACTTCCCTC CTTCTATAAT ATCATAGATA TATATTAAGT GCTTAATTTG 002080 002081 TGTCTCATAC TCTTATAGCT AGAGACATCT TTATAAGTGC ATAAAGTTta aaataataat ttatattagg ctacattaag 002160 002161 tcaagtatgc atagttaagt tcctagggta atcactgaag gaatagtttc aaaatgctaa tggagagaaa atatgaatag 002240 002241 taaaaTAGTT ATTTGACCTa aagatagcaa gaaaagatag taacgagaat ataaaataga tggatgaaat agaaaataac 002320 002321 tatatctata ataacattaa atgtaaattg agtaaataat ccaattaaga cctagaatat cagaatcgaa ctatatgacg 002400 002401 atgagtgcat cttaaataga aagacacaga aaagttgaaa gtaaaatgta aaaggtatat catgcaagta gtacttacca 002480 002481 aaaatatttg gcttagctat attgacatta gaaaaagtag attcttatga caatttgtat tagtagctaa agggatttac 002560 002561 atttcaaaat gataaaaagg tcagtctcct aggaacataa atcccaaatc tttatccacc aatagtgtaa ttattaaata 002640 002641 catacagtaa aaaattatta aatacataca gtaaaaaatt gatatagcta aacattttaa tagaaaaatc taaaactaaa 002720 002721 aatttagtag aaaaattata taactaaaca ttttaataga aaaatctaca atcataataa aagaccttaa cacatctctt 002800 002801 gtgaagttac ttttaaaaag taaacaaaaa ttctcaaagg atagagaaaa tcttagaaac acaattaacc aacttgactg 002880 002881 aataaatata tgtagactgt ttcacccaac aatgatagaa tccacattat tttaattgca gatgaaacat tttaaaaatt 002960 002961 aataagatcc tgggtcatat agtaaatatt gacgtatttc aaagccttga ataattttta gtttttctaa ctggaataaa 003040 003041 tttatgttaa aaattagtaa ctgaaagatg attaggacat ttccaaccct tggaaactag acacttttaa atccaggaat 003120 003121 caaaaaataa attataatgg agattacaga ccaagcacca tggctcatgc ctgtgctttg ggaagtcgag gtgacaggat 003200 003201 cacttgaggc caggagtttg agactagcct gagcaacata gcaaaatcct atctgtacac acagaaaaag ttaggtgagt 003280 003281 gtggtggtgc atgtctatag ttctagctac tcacgagtct taggtaggag gattgcatga gcccaagagt tagaggctgc 003360 003361 aatgagctga ttatgccact gcacacctgc ctgggaacag agtgagaccc ggtctctctt aaaaaaaaaa aagaaaaaga 003440 003441 aaaagaaaat acttttaatt aaatgatagt tgagatatta tatgtgaaaa ttaatggtat tcagctaaag cagtgtttag 003520 003521 atacaaattt aaagtctagg atctatttat tagaaaaaat aagagctaaa agaggacaat ctaagcttcc ttttcaagac 003600 003601 acacaaaata cagcaaaaca aactgaagac tagcagaagg aaataataaa gatgagataa taaatcaata atataaaaca 003680 003681 caaacaaata atggaggaaa taaaGGTTTT TTATGGGCAA CGATTTtggc cgattaatga tgctcacaca ttctttgaca 003760 003761 ctcctcttat ggagaggtgc actttgtgtc tgctgtcctt aaatctggtg agctctgtga ctattttgaa taattaaata 003840 003841 tggcagacat gtgccattct ctctggatct aggctttaag aaactgtcag tttccacttc ctgtctctag gaacctgcac 003920 003921 ttacagccct gagatatcat gtcagacatc tgatttacac gtaagtgttt cagacgacta tttcaactaa ttcctgcctg 004000 004001 ccagttatcc ctgccaagat gtctggcata tgagtgaagc tgatatggat ccttccagct ggagcaaacc agctggccgc 004080 004081 tgaatagcac caactgatct cagtcagtac ctcaaaagag tagaagaatc atccagctga gccctgcccc aattcctacc 004160 004161 caccaaatca taagatataa aaaagtttgt tattctaaat tgaaaggttt tagattattt gttatgcagc aatagatagc 004240 004241 gagaacaAAT ACATATAATT AAATTTGACA ATTTTCAATT TTATGTTGTT TTAAATGttc tattatgaag taattttaga 004320 004321 tttccaaaaa aagttataag aattttacaa aatatttcca tattcatata gatttttcaa atgatatttt tccacctttg 004400 004401 atttctctat ctacccatca actgtccatt tttgagtatt tgagagtaag tagctgacat tattcattac cactaattac 004480 004481 ctcacatacc tcagggtata tttctttaaa acaaagatat tccctcatat aactgcaggg cactttttga aatcaagaga 004560 004561 gcatcattga tttagtactg ttatctatat atagtactat acataggcct tgttcagatg acaccatttg ccctaatcaa 004640 004641 gtactttata gtaaaaggtg atccttttgc aatcagttgt gtctcctgag tctcttttaa tctgggacag ttccagtctt 004720 004721 cgtcttttat aacatgataa ctctcaagaa tacagtcaac ttatgttttt aattaatgat tcttgatgtt tatctactgt 004800 004801 ttcctcatga ataattcagg ttatgtctca aaaaagaaac aatactacag aagtaacgta ctattcccag tgtgtcatat 004880 004881 cagaaggcac ttaatgttgt cttatgctat tattgataat gttaacttta atcacttggt aaaggtggtg tctgcaaagt 004960 004961 ttatccactt tcaggttgct atttttcact ttgtaactaa tagatatctt gtgataggat actttgaggc cagctaggta 005040 005041 aatgtcttat ttctcattaa acgtcccctc actagttttg gcaAATGTTt ttatgtcact tcaaaattcc tatgtagaaa 005120 005121 tcctaactcc caatatgatg gtattagaag atagggcatt tgttaggtga ttaggtcatg agagtggaga cctcatgaat 005200 005201 ggaattagtg cccttatagc agagactctg gagcactccc ttgccccttg aggacacata agacatttga ggacacaatg 005280 005281 agatatccat ctatgaaccc aggagcaggc cctcagaaaa tgctgaattt gcctgcagct tgatcttggc cttctcagcc 005360 005361 tcaaaaactg caagaaataa atttctgttg ttcttagagt ccacctagtt tatggtattt tgttatagca gcctgaacaa 005440 005441 actgagacaa ttggtgattt ttgtctcact cctttatcat tttgatggtt gccaaattat gattttccaa ttgtatcatt 005520 005521 ctttatacat ctaatactac attgtactat aagaaagaac atttcttcat aattggttga ttacttaatt aatatttgca 005600 005601 tggactcagg tactcctatt taatgggttg tgatttctta tggtcattat attgatgctc aaattgttcc agatttaact 005680 005681 agtgggagct ctttcaaaat acctcttagg attttgtaac gtgtcctcat tattatttaa gtatgtcttt actttcttgc 005760 005761 attacagcat tacaagatgt ttcaTTCACA GGCTTTGAAG TTCGTAGCAC AGAACTTCTT GCCCTTTGAT GTTACCCATT 005840 005841 TATGATACCC TATGTCCGAC ATTTTGTCTC TACACAGACA CCAGAATGCT TACTTGACTT TATCGCCACC AGATTCTTGA 005920 005921 GCCTCTTCTA TGATTCCAGG ACCCCTGATT GGATGTGCTC TATTTCCTCT ATTTTTAAAC CTGTCAGATA TTATCTTTGC 006000 006001 TTTTCTTAAC TTACCACTCT ATAACATGGG GTATGATCCT GTACCCTGTG TGCCTTTGAT AAGTATTGGT GGACTGATGG 006080 006081 TCATGCACAG AAGAGCTTGC CGCACTATAA CCCTCAGGAA GAACAGCAAG CTAAAACATA TGACCTAACT TCTACAGTTT 006160 006161 TTTAGCATCA CAAGAACATG CAGGGCACAT TATTTTGAAT GAGGACACTC AGACCATTAA ATGTCAAAGT AGCCTAATTG 006240 006241 TTAACGGGAC ACATGTAGTG AGAAAAATGT GTTTGTACTT GTTGAACAGA AGACAAATGT AGCCGAAAGT ATTTAATATT 006320 006321 GAAATACAGC TTAATCAGGT GCTTTAAACA ATTAAGCCAT ATAATTTATT AAAGCATGGC TCTGAGTTTA AGTATCAACA 006400 006401 CTCTTCCTCT CCCATTCTGT TCATCCTTTG GAAGCCTACC TTCCTATCCC CATTTTGTTT AGTCACCTTT GGCTTGAAGT 006480 006481 TGACCAGTAT TCAGTGGCTA GTGGCTTCTA TCTTATGGCA AGAGAAGGAA AAGAGATGAG AAGTAAAAGA CAAAAATAAT 006560 006561 AGAGAAAATA TTTAAAGGAT TTGAAGCAAA GCATCTGAGG ATATAGGTAC TGTTTAGCAA ATCTGAATAT ATTGCAACAT 006640 006641 TATTGCAAGG AAGGAGAGAT ATGTTAGGGA ATTTCAGCAC TAAAGATGGT CTACTTTTAG CAGACACATA AAGATAATTT 006720 006721 CATTTGAATT TTTAAATTTC CTTTGGCATA CAATATGTTC TTTGCTAAGA GAAAATACCT TTCATATGTC ATTCTAGGCA 006800 006801 TTCTTCAACA CAAAGCAGGA CAAGATGTAT TTTAAGGTaa agagtacaga cactggaatc agtaggagtt gctgtttcca 006880 006881 ttcattagtt ttgagacctt gagcaagact atgaatgtca gtttcctcat gttaaaacag ggatgataat acttattttg 006960 006961 ttatgtgcta taaagcagag gtctccaacc cccggggcca tggactggta caggtctgtg gcctgttggg aactgggcca 007040 007041 cacagcagga ggtgagtgaa gcttcatctg tatttacagc cactcctcat cactcgcatt accacctgag ctctatcgcc 007120 007121 tgtcacatca gcagcattag gttctcacag gagcacaaac cctatggtga actgctcatg tgaaggatct agcttatgtt 007200 007201 ctccttgtga gaatctaatg cctgatgatc tgtccccatc tcccatcgcc cccagatggg agcatctagt tgcaagaaaa 007280 007281 gaagctcagg gctcccactg aatctacatt |
Predicted Small Protein
Name | NONHSAT122818_smProtein_797:952 |
Length | 52 |
Molecular weight | 5776.8137 |
Aromaticity | 0.117647058824 |
Instability index | 49.6764705882 |
Isoelectric point | 9.78216552734 |
Runs | 9 |
Runs residual | 0.0222286934576 |
Runs probability | 0.0358495750652 |
Amino acid sequence | MKIVILRCPVVEWSFPQSVGSFSFISLSTNPSSFAKLRLIMSTHDAIKMQF |
Secondary structure | LEEEEEELLLEELLLLLLLLEEEEEEELLLLHHHHHHHHHHHHHHHHHLLL |
PRMN | - |
PiMo | - |