NONHSAT131104
Revision as of 07:16, 17 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT131104 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3723 nt |
Genomic location |
chr9-:37877572..37904350 |
Exon number |
5 |
Exons |
37877572..37880745,37881515..37881628,37899826..37899947,37903528..37903554,37904065..37904350 |
Genome context |
|
Sequence |
000001 ATCAAGGGTG AAGCATGGTG GCTAGCGGAG CCCGCATCCT GACAGGTGTG CTGGCGTGGC CCTCTACCTG CCCCGCCGCG 000080
000081 GCGGCCTGCG GCCAGGAGAA GTAGGCTGGC GACATCTGGC GGGCCGCGGG CCGAGGGAGG GGAGGCGGGG CGGGGCGGTG 000160 000161 TCTCCCTCAC GTGACCCCAA CAGCGCCCAG CGCGTCGCGC TGCGCCCCAA CCTCGGGGTC GGTCACAGTC TGCGCCTGCG 000240 000241 CGGGCCCCGG CTCGCTAGCC GTCCTGCGGG ACGCCGGCGC TGATGGGTTG GGGAAATGGA CGCCTGGAGA ACGGAAATCC 000320 000321 AGTTATCAAA ATTGACTCAA GAAGAGAGAA CCTAACAGAA CAATAACAAT GGAAGAAATT GGGAACATTA TCACAAAGCT 000400 000401 ATCATCCTGC CAAACTCCAG GCTCAGATGT CACAGGGTTT CTATTGCCTG GGCTGGAGTG TAGTGGCATG ATCATGGCTC 000480 000481 ACTATAGCCT TGACTTCCTG GGCTCAAGCG ATCCTTCCGC CTCAGCCTCC TGAGTAGCTG GGACTACAGA GACGGGGTTT 000560 000561 CGCTCTTGTG ACCAGGCTGG AATGCAATGG CGTGATCTCG GCTCACCGCA ACCTCCGACC TCTGGGTTCA AGTGATTCTC 000640 000641 CTGCCTCCGC CTCCCAAGTA GCTGGGATTA CAGGCATGCG CCACCACGCC TGGCTAATTT TGTATTTTTA GTAGAGATGG 000720 000721 GGTTTCTCCA TGTTGGTCAG GCTGGTCTCA AACTCCTAAC CTCAGGTGAT CTGCCCACCT CGGCCTCCCA AAGTGCTGGG 000800 000801 ATTATAGGCG TGAGCCACCG CGCCGGCTGC CTTAAATCTA TTTATCTGAC GTTCCCAACT AGGAAATTTT TTGTCCAAAT 000880 000881 GAGTATATGT GATTTTAAAG TAGAAATCGA AGGTAAAATA GGATTTATCT CAGTTCCTAT CTCCCTTCAA TCTATTCTTC 000960 000961 ATATTGTCAA TAATTTTTTT TTTTTTTTTT GAGACGTGGT CTCTGTCGCC AGGCTGGAGT GCAGTGGTGA AATCTTGGCT 001040 001041 CACTGCACCC TCTGCCTCCT GTGTTCAGGC GACTCTCCTG CCTCAGCCTC CGGAGTAGCT GGGATTGCAG GCATCCGCCA 001120 001121 TCACACCCGG CTAAATTTCG TATTTTTTCA GTAGAGACAG TTTTGCGCCA GGCTGGTCTC AAACTCCTGA CCTTAAGTGA 001200 001201 TCCACCTGCC TCAGCCTCCC AAAGTGCTGG GATTACAGGC GTGAGCCGCC GTGCCCGGCC ATCAGTAATT TTTTAAAATG 001280 001281 TCACTTCAAT AAATGCTTTT CCTCTGCCAT AAAGACCAAA CATCTTGCTG TGGCCTACAG GAGACAGGAT GATCCAGCCC 001360 001361 TTGCCTCCCT TACTCTCATC TCTAGCTAAA ACTGCGCTGC TGTCTCTGCA CTCCAGCCAC TGGCACTTCC TGATTACTTG 001440 001441 GGGCACGCTG TACTCATCTT GCTCCCAGCC TCTGCCCATG CAGGTGCCCT CTGCCCTCAG CACTGCCTTT CTCTACTTCA 001520 001521 TTTATAGACT GCTGTCCTTC AGATCTCGGT TGAAGTGTCA CTTCCTTGGG GAAGCTGGCT TACACTCTCA GGACTCGGTT 001600 001601 AGGTTCCCCC GTCAGGCTCT TCTATGTCAC CATGTTTCTA TTTTTCACAG CACTTAACCT GTTTTAATTA CGTTGCAAAT 001680 001681 AGTTTTTGTT TGGGTCTAGA GAAGCATGTA TTCACTAGTA CATTTTATTT GTGTTCTCTA ATTATTTTTT CTGCAGCTAA 001760 001761 ATTAGAAATT TGTAGTTTTC CCCCTAAAAA TGCAATGATG TTTTCTCTGA TTTTCTTGTC ACCTTTCTTC CAAAAAATCC 001840 001841 ATGTGTTCAA AGTGCTTGCT TGCAGTTTGC CCCATAATAA ATGGTTGTTT AATCCAAATA TCTGAGTAGC AAACTGAGCT 001920 001921 GATCCTTCTG GAGAAAGTAT GGTTGAATAG CCGAGACCAC TGAGTAGTCG CAGAGAAGAC CACACATCCT GAACTCCTCA 002000 002001 GTCTGGTGTG AGGGGAGGAC AATAGATAAC TGGATGTGTA GTGTTCCCAA ACATCACTGA TCCCAAACCA TTGCTTCTGC 002080 002081 CTGCCACTGC CACAAATACA GTACGACTGC CACCCCTTCA TACTCAGCTT TAATCCTCAG CATTTCTTCT GGTCCTTTAT 002160 002161 GTGCGGATGT TACTCAAAGT CTACATGGAA TGCCAAAATT TCCACAGGCC TTGATTTTTT TCACGGTGAT TAAGATCAGA 002240 002241 AGTAGAACCC ATCAATACTA TAACACTGCA CTGACTTTCT GATTTCAAAA GCAACTCTAC TCTCTACAAC CCACGCAAAG 002320 002321 TTTTTCCTTA CCATTTGGAA CCCTTCAGGA GTTACACTGA AGCCTTGATA AGACTGTTTC AGCCAGGAGT GGTGGCTCAC 002400 002401 GCCTGTAATC CCAGCACTTT GGGAGGCTAA GGCAGGAGGA TTGCTTGAGT CTGGGCAACA TGGCAAGACT GGCTCTATTT 002480 002481 TTTTAAAATA ACATTTTTAA AAGTATGATT AAAAGACTGT CTTTCTATTG GCTTTGCTCC CCCGATGGTG AGTGTCTCTA 002560 002561 GGAGTCATTA TCAATAACAT CAGTGAGAAT TTCTTTGCTG GTCACATGAA CACCAAATTC AATCTTCATA TCAACCGGTG 002640 002641 TACAGTTCTG GGAGCAACCG GGATTTCTCC GGGATTTCAA AAACAGCCTA TGTGGCATGA CTCATGATAT CCACTTCAGT 002720 002721 TTTATACCAA GTGCAGCAAA GCCAAATTTT GCTGCAATTA GCTGTTGCCT AGACCACTGT GGGTCATGAT TGGCATCATC 002800 002801 CTTGAAAAAC ATCTCCACTT TAGGTGGGCA AAACTCACAT CCTTCCTTGA CACCAGGATT TCTTTCGAGT GAAGAACCAG 002880 002881 TTGGTATTCT TCTGCAAACC ATTCAGTTGG AATTATTTCA CACTGGGGCA CAATGAAAGC TGTCTCCTCA CATTTTCTGG 002960 002961 TGAAAGCAGT TTTAATACCT GCTTCCTGTA ACAACAGAAA AATGCAACTG GTAATTTTAT TTGAGATTGC AGCTTTTCCT 003040 003041 TCCAGGTGAT TCTGACTGCA TTTCCTGCTG TAATCTGGTC CTTAGATTGC AGGACTTTTC CTGGCCTATC TAACAAGCAA 003120 003121 TTCATAGACC TCTTTTGTTT TACCCTCACA TAGTTTTTTA GCAATGTTCA GTACCTCAGC TCTCACTATT ATCCTGAGTG 003200 003201 GGATGAAAGT TGCACCCATG CTGAGAGGCA GAAATCTCTG TTGTGAATAT TTGATACCTC TTGCTTTATT TATTTATTTA 003280 003281 TTTATTTATT GACACAGATT CTCACTCTGT CACCTAGGCT GGAGTGCATT GGCGCAATCT TGGCCCACTG CAGCCTCAGC 003360 003361 CTCCCAGGCT CAAGCGATCC TCCCATCTCA GCATTGCCAG TAGCTGGGAC CACAGGTGTG TGCCACCATT CCCAGCTAAA 003440 003441 TTTTGTATTT TTTGTAGAGA CAGGGTTTCA CCATGTTGCC TAGGCTGGTC TCAAACTTCT GAGCTCAAGT GATCCACCCA 003520 003521 CCTCAGCCTC CCAAAGTGCT GGGATTACAG GCATGAGCCA CCATGCCTGG CCCTGTTGCC TCTTTAAAAA GCCAGTCCTG 003600 003601 GCAGGGCACA GTGGCTCACG CCTGCAATCT CAGCATTTTG GGTGGCCAAG GCAGGAGGAT CTATTGAGTC CAGGAGTTTG 003680 003681 AGAGTTCAAG TCCAGCCTAG GCAATATAGT AAGACCTTGT CTC |
Predicted Small Protein
Name | NONHSAT131104_smProtein_716:991 |
Length | 92 |
Molecular weight | 9971.6416 |
Aromaticity | 0.131868131868 |
Instability index | 43.3747252747 |
Isoelectric point | 9.18463134766 |
Runs | 14 |
Runs residual | 0.0203754578755 |
Runs probability | 0.0323895323896 |
Amino acid sequence | MGFLHVGQAGLKLLTSGDLPTSASQSAGIIGVSHRAGCLKSIYLTFPTRKFFVQMSICDF KVEIEGKIGFISVPISLQSILHIVNNFFFFF |
Secondary structure | LLEEEEELLLLEEELLLLLLLLLLLLLLEEEEEELLLLLEEEEEELLLLEEEEEEEEEEE EEEEEEEEEEEEEELLHHHHHHHHHHHHEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLL LLLLLLLLLHHHHHHHHHHHHHHHHHHHLLL |
PiMo | oooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTiiiiii iiiiiiiiiTTTTTTTTTTTTTTTTTTTooo |