NONHSAT132848

From LncRNAWiki
Revision as of 07:21, 17 October 2014 by 124.16.129.48 (talk)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT132848

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

2015 nt

Genomic location

chr9-:89623366..89657041

Exon number

2

Exons

89623366..89625125,89656786..89657041

Genome context

Sequence
000001 GTCACCCCTT TCTCTGACTA GGAAAGGGAA CTCCCTGACC CCTTGCTCTT CCCGAGTGAG GCAATGCCTC GCCCTGCTTC 000080
000081 AGCTCGCGCA CGGTGCGCGC ACCCACTGAC CTGCGCCCAC TGTCTGGCAC TCCCTAGTGA GATGAACCCG GTACCTCAGA 000160
000161 TGGAAATGCA GAAATCACCC GTCTTCTGCG TCGCTCACGC TGGGAGCTGT AGACCGGAGC TTATTCGGCC ATCTTGGCTC 000240
000241 CTCCGTTCCC TCTATGAGTC CAACCAGGAT GGCGACTTGA CTGGATTTTA CAGTTTCATT GACACGCATG AGCTCTATCA 000320
000321 AACTTCTGGG AGTTTTTCTG AAATGTTTAC ATGGAAGGCA CCTGGAGCCC ATTGAATTTC CCTCTTCAAA TGCTTAAGTT 000400
000401 TTCTTCTGTC TTGGTGGCTA CTGCCTCCTT CTCACTTTCT GCCTTAGGTC AAGATAAATG AGTTTTTCCC CAAGAAAGCC 000480
000481 ATATGGATCT CTGAGGTTTT GAACTCTAAC CAATGCTATC TCGTTGATTG CCTTTGGATT TCAGGGTCTT ATTTTACGTC 000560
000561 AACCTCAGCC TCTCTCTTCT GCAGTTCCAT ATCCACATGA GCTACAAGAG TCCCATGTAG GTCCCTTCCT CTGCTAATAG 000640
000641 CTGCCTCATT GTACTGCTTC TGTATTCACT TCAGAGATAG AGGATCAAAT GGTAGAAACT TTTGGCAAAC TTTTGACCAG 000720
000721 AGAATGGCTT ACATGGGAAT TAATTATGCA CTTGTTCGTT TTACTCTATA GAACAATCCC ATCTGTATTG GATCTGTATG 000800
000801 TTCCATCTCC CATGTGAAAG AAGCACCCTA CAAAGATAAC TTCAGTCTGG GCACAGTGGC TCACACCTGT AATCCCAGAA 000880
000881 CTTTGGGAGC CTGAGTGGGG AGGATCTTTT GAGCCCAGGA GTTCGAGACT AGTCTGGGCA ACAAAGAGAG ACCCTGTTTC 000960
000961 TAAAACAAAA ATAAAAACAA AGATATCTTC CGAGCCTGTT CAGTCTTTGG TCCTGGTTTA GATATAGGTA TATAGAGAGA 001040
001041 GCTATTTGAG TAATCAATTC CCAATATGGT ATGATTTGAG CATTTGGAGA GGTCTTCTTT ACATATCATA GTACTTAGAT 001120
001121 TATTACCAAT AAATATTTTT CTTTTGGGGT TAACATTACA GTAATAATAT ATTTTGAATC TAAAATTTGG ATGGAGACAC 001200
001201 AGGACACAGA ATATATAATG CTCAAAAAAT GTAATGCTCA ATGAATGTCT CTATCATATT CTTTTTTGTT GTTGTTGTTG 001280
001281 TTATATAGAT GAGGCCTTCC TATATTGTCC AGGCTGGTCT CAAACACCCA GCTTTGCCTC CTTATGTGCC AGGAAAACAG 001360
001361 GCCTGAGCCA CCAAGACTCT CAATATATTA TTAAAATATA AACAAATTAC TTGAAGTGGT ACCCCTCAAA ATAATGTCAT 001440
001441 TTTCACTTTA ATGTAAATTA GTCTTACTAT AAAATCACTT TCCTGCTTTC AACAAGTTGC AATGTAAGAC GGGACATTTT 001520
001521 CTGAAATGGA GAGAAGATAA ACATGAAGTA AGAAGCTTTG TCCCCAGCAG GCTTTTCCTG GCAGAAAATA TGGACATCTG 001600
001601 GGTGGTGTCA TAGTCAGGAG GCCAGGAGGA AGGATTTGCC AAAATGGGTA AACTGGGCAG TGCATGAAAA CTGGTGCCTT 001680
001681 TGCTCCTATG GGCCATCATC CTGTTGATAG TGAGGTACCA AGAGAAGTGC TGATGGTAAA GCCCTGTGTC CTCCCCATCC 001760
001761 ATGATCTTGG CCGAAAGCAT TAACCTCCGA AGAGTCTCGG TGCTTTTAGA GACTTCCTGG TCTGAAGTGA CTGCCTGTTG 001840
001841 TGGACAAAAG CTGAAAACAA ACAACATAAA AACAAACTAA AAAGGTCAGT TACTCAAGGA TCTAGACAAC TAGCCAACAC 001920
001921 CTCCACAAAC AAATGGGAGC TTAATAGACT TTGCAAAATT ACTTTTTATC CAGTTGTTTT TTTTTGCTTA TTTAATAAAG 002000
002001 TTGAAAATAC AATGC
[back to top]

Predicted Small Protein

Name NONHSAT132848_smProtein_1760:1879
Length 40
Molecular weight 4365.0626
Aromaticity 0.025641025641
Instability index 50.3025641026
Isoelectric point 8.84063720703
Runs 5
Runs residual 0.0405354449472
Runs probability 0.0257198374845
Amino acid sequence MILAESINLRRVSVLLETSWSEVTACCGQKLKTNNIKTN
Secondary structure LEEEEEEEEEEEEEEEELLHHHHHHHHLLLLLLLLLLLL
PRMN -
PiMo -