Lnc-SCYL1-1:5

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Annotated Information

Name

mascRNA: MALAT1-associated small cytoplasmic RNA

Characteristics

mascRNA is a conserved, 61 nucleotide, tRNA-like sequence at the 3' end of Malat1 that is cleaved off the full length transcript and processed to generate a short tRNA-like ncRNA.

Mature mascRNA undergoes a post-transcriptional CCA addition and folds into a tRNA like structure but could not be amino acylated.

Function

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Expression

mascRNA was cleaved off Malat1 in a wide variety of human tissues.

mascRNA is cleaved off Malat1 by RNaseP in the nucleus before further processing by RNaseZ and then exported to the cytoplasm.

Conservation

Conserved in mammals and back to reptiles and amphibians. More highly conserved than most of Malat1.

Misc

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Transcriptomic Nomeclature

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Regulation

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

Annotation originally sourced from lncRNAdb.

Basic Information

Transcript ID	lnc-SCYL1-1:5
Source	LNCipedia2.1
Same with	,
Classification	intergenic
Length	61 nt
Genomic location	chr11+:65273587..65273645
Exon number	1
Exons	65273587..65273645
Genome context
Sequence	000001 GATGCTGGTG GTTGGCACTC CTGGTTTCCA GGACGGGGTT CAAATCCCTG CGGCGTCTCC A

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