NONHSAT108099
Revision as of 20:53, 25 July 2014 by 124.16.129.48 (talk) (Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
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===Functio...")
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT108099 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1832 nt |
Genomic location |
chr6+:23438116..23439947 |
Exon number |
1 |
Exons |
23438116..23439947 |
Genome context |
|
Sequence |
000001 gaagagagag aggagagata gtgagggcca gatcagatca tgtaagatcc tttaaacctc tggtcatcac tttagtttat 000080
000081 attctcagtg agatgggaag ccatttgagg acttttaggc caaggatgga tataatctct cttaactttc aaaatgatca 000160 000161 ctttggcaac agtatggata atggactata tggcagccaa gtgtgaaagt attgaaatca attaagtcta ttgtaagtct 000240 000241 aaacaagagg taatggtcca cactgcagtg tgaacagtag agaggttgag aagtaatcag attctggaag agctgatagg 000320 000321 attttctaat gggttaaata aagatgtgag aggaagagca gaatcaggat gattctagtt ttagacttga cccactaaaa 000400 000401 gaatgaagat gcAAAAGAGA GAATAGTAGT CCTTTctttg ccaaaaatca gctctgcata gctgtgtcta ttttgttcca 000480 000481 ttgatctatg tgtccgtccc tctaccagga ccactctgtt tggattcctg tagacacaaa atcacattgg gtttgtgatt 000560 000561 tctccaacct tatcgttttc aaaattgctt aagtaattct atgtattttg cctttccata ctcattttag aatgagcttg 000640 000641 tcaaaaaatc atgctgggat tatgttggca attgcattaa atctatagat ccatttggtg aatattactg tctttactat 000720 000721 gttgattact ccaattcctg actacagtat gtctctccat ttatttaggt ctttaatttt ataaatcagc attgtttgga 000800 000801 ttttactata tacatcctat gcatgttttc ttagatttac acctaagtat ttctcttttg gaggaattat tctaaatgat 000880 000881 atttattttt actgtcagtt tttaattact cattgctaga atatagaatt ataattgtca attaagttgt gacagattaa 000960 000961 tttctttctg attcgtatgc cttttctttt ttttcatttt tctttttctt ttgccttatt gtgctgggtg gcattccagt 001040 001041 aatatgttga atatgaatgg tagaagtgga cattcttgaa ttgttcccca tcttaggaag gaagcattca ctcttccacc 001120 001121 attaggtgtg atactatgat gttatctgta ggcttttttt ttttttttcg gaaatgcttt tatgagactg acgatattct 001200 001201 cttcctcttc tagtttacag agagattgta tcatgaatgg gattaaagct tgtcaaatac ttttttctgc atcaaacagt 001280 001281 ataatcacgt gcctttgctt gttttgattt ttaatttgta gaatacttcg atttttaaaa tatggattaa gccttgcatt 001360 001361 agtggaataa gggaataaag tccacttagt tttagtgtat tactcttctt atatgttgtt agatttgatt tgctagtact 001440 001441 gtattgggaa tgtttgtgtc tatgctcatg ggggatattg ttctgtactt ttcctacggt aactgtcttt ggttttggta 001520 001521 tcagagtaat gctgacctta taatatgaac tgggagtctt cccctcctct tctgttttct gaaagaagtt gtataagatt 001600 001601 aatattagtc tttctttaaa tatttggCAT GCTTATATTT TAAAAAATCA TGTTGACAGA ATTGAGGTGT ATATGTAAAG 001680 001681 TAGAATCAGG AAGGAGGCCA CTGAAGTTAT TTTCATGAGA GATAAAGCTG TCTTGGCTAA GTAGATAATT ATAGGGATGT 001760 001761 AAATAGACAA TTATGTAACA TATATATGTA Tactgggtag cattccagta atatgtagaa tatgaatagt ag |
Predicted Small Protein
Name | NONHSAT108099_smProtein_1181:1306 |
Length | 42 |
Molecular weight | 4517.3619 |
Aromaticity | 0.0731707317073 |
Instability index | 49.8219512195 |
Isoelectric point | 8.52081298828 |
Runs | 8 |
Runs residual | 0.0191530749663 |
Runs probability | 0.033838986045 |
Amino acid sequence | MRLTIFSSSSSLQRDCIMNGIKACQILFSASNSIITCLCLF |
Secondary structure | LEEEEELLLLHHHHHHHHHHHHHHHHHHHLLLLHHHHHEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTo |