NONHSAT119899
Revision as of 21:36, 25 July 2014 by 124.16.129.48 (talk) (Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
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===Functio...")
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT119899 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1558 nt |
Genomic location |
chr7-:30599604..30604233 |
Exon number |
2 |
Exons |
30599604..30601744,30603339..30604233 |
Genome context |
|
Sequence |
000001 CTTGTGATAG GGAGACAGGA GTCCTAGGAA GGAAATGGAA CTGGTGATAG GGAGACAAGA GTCCTAGGAA GGAAATGGAA 000080
000081 CTTGTGATAG GGAGACAAGA GTCCTAGGAA ATGGAAGGAG AGCACGTTTC ACTCTGTCCA GCAGAGGGCA GCAGCTACCC 000160 000161 ACAAATCAAC AGCTGAGCAA GGCCAGGGCT GTGTGGGAGC TATGCACAGG TTCTGCCTCC AGAAGCCTTC AGTGCCTGCC 000240 000241 TCTGAGCCAG AGGGTTCCAA GCAGAAGAGG TCCCGCCCCC GGAGAGGGAC CTCAGAGAGG TCCTCCAAGC CCCTCTCAGC 000320 000321 TCTTACTTAC GGCATCCCAG ATGCCCTATT CCTCTTCTGC AGAGAGAAGG TGGTTCAGCC ACTAAATGGT GCTGGGACCT 000400 000401 CGCAGTTTGG TGGGAAGGAG GAAGCTTACT CAAGCAAGGA ATATGAGACA GGCAAAAACC CACGCATAAG CCAAAAGCCC 000480 000481 CTCCAAAGCG AGGTGTTGTT CCAGGCTGAC AAGTGTCCAG CAGGGTGGAC TTCAGACTCC CTGTTAGGAA CTGAATTGTG 000560 000561 TCCCCCAAAA AGAGAAAGTC ACCCCAGGGT ATGACCTAAT TCAGGAAAGG TCATTGCAGA TGCATTTAAT TAAATGAAGA 000640 000641 TGAGCTCATG CTGGAGTAGG GTGGACTCTG AACCCAGTGG GACAAGCGTC CTTATTAAGA AGAGGGAAAT CTGGACACAC 000720 000721 ACAGAGCAGA GACCGCCGTG TGAAGATGGA GGCAGAGATC GGAGAGATGC TGCCACACGC CACAAATGCC TGGGGCTCCC 000800 000801 AGAAACTACA CGGAGCCTCC CCCAGCGGCT TCAGCAGGAG CATGGCTCGG CCAACACTTT GATCTTGGTC TTCCAGCCTC 000880 000881 CAGAACGGTG AGTCGTTTTC CTAAAATTCC CTTTTCCACT GGTGTGTGGT GCAAGATGAG GCACATTTTC CATGGATGGT 000960 000961 GAACAGAGGG AGGAGCCTTT TGATCACAAC CAGGTCACCC CACTTCTAAG CCACTGTGCC TCCAGCCCCA CAAGACTAAG 001040 001041 GAGAGAGAGC GCAGCGTGGT GGAGAGTGAG CTGTGCTGGG ACCATTGTTT CCGTAACCTC GTTTTCTGTG TCCAGCTGAC 001120 001121 ACACCTTCAA AGTGGCATCA GGTCCTAAAC TGTAGCTTGC AATGTGCCTG TTTCCAGAAA CCAAGGTGAA AGTGCTTTTA 001200 001201 GACAGTGTTC CCATGCAAGA GTCCCTTCCC AGCTTTTTTC TGGAAATGCA TGTTTCTCTG AACTCTGAGT CCCAAGAAAA 001280 001281 ATCACTTGAG ACACCAAGAA AATGGGGGAA GTGCTAAAAT TGTGTGGGAA TTCAAGCTTA ACAATAAACA TCAAGACATT 001360 001361 TTTGATAAAA ATGAATCCAC TGACATCGGG GAGGAGCAAG AGAACAGCAC GCTGACACTG GGTCAGAGGC TAAGACCGAC 001440 001441 ATTTCTGGGA ACCACTCCCG GAAGGGCACA GAGGAGACGC TTTCAGCCTC TCATCAGCCA GCCTGGCCTG TAGCTGCTGC 001520 001521 ACGTTATGAG TGTGTTCCTG GCATGACTGC TTCTAACA |
Predicted Small Protein
Name | NONHSAT119899_smProtein_785:961 |
Length | 59 |
Molecular weight | 6434.3545 |
Aromaticity | 0.137931034483 |
Instability index | 68.2879310345 |
Isoelectric point | 10.2844848633 |
Runs | 9 |
Runs residual | 0.0014209928003 |
Runs probability | 0.0291762350586 |
Amino acid sequence | MPGAPRNYTEPPPAASAGAWLGQHFDLGLPASRTVSRFPKIPFSTGVWCKMRHIFHGW |
Secondary structure | LLLLLLLLLLLLLHHHHHHHHHHLLLLLLLLLLEELLLLLLLLLLLLEELLLEEEELL |
PRMN | - |
PiMo | - |