NONHSAT135219
Revision as of 22:38, 25 July 2014 by 124.16.129.48 (talk) (Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
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===Functio...")
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT135219 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
5366 nt |
Genomic location |
chr9+:134366152..134375584 |
Exon number |
3 |
Exons |
134366152..134366967,134367556..134367647,134371127..134375584 |
Genome context |
|
Sequence |
000001 AAACAGTAAG AGTCTTGAAC GTGTGTGCTG TACAAAGGAA TGCAGAGATA TACGTCCGAT GCAGCTTTCA TCTTTTGGGA 000080
000081 CTTGGCTTCG CCATTACTTC TGACTTTCCT CACTCGTCCT CTCCTTGCCC ACCCCGCCCC GTGTGCACCC ATAAATCTGG 000160 000161 TGTGCACCCA CAGATCCTAT GCCGCTCTGC ATCCCGAGTG TCCTGCAGCT GTGTCCAGTG TGTGACACAC TATCCTGGCA 000240 000241 GTGTGCAGGC CCATGTTGGA CAGGGCCCTG CCGCTTCCTT GGCACCTTGT ATGCTTTCAG TAAGCACTTG CTGGACAAAG 000320 000321 GCAGAAAGGG CTGAAGATAG ACGCAGCCCT TAGCAGAGAT GTGGATGAGA CACACTTAAC GCTGTTAGTT CCCATGCCTG 000400 000401 CAGCCAGCTT AGTCTTGCCC GTTTTCTCAC CACCTACTCT ATTCCAGCAA GAAGACGTGC CTCTGCCATC GAAGGTGTGA 000480 000481 AATCCTGGGC GATCTCTCCT GTGCTGCAGT AGAAATTAGA GCATGTCCTG CTTTATGCAG GCTTTGCTTT AGTTCTTCTG 000560 000561 AAGTGTATGA ATCTGAAGTG CATGTGCGGT CGCTCTTTGG TGCGTTTGGG GTTTCTCCAT AGCATCATTC CCCCTCCTGA 000640 000641 CTGTCATTGT CGCCCAGCAG CTGACCATGC CACTGCCTCG GTACGGCTCC GGGCAGCAGC CACTGATCCT GCCCCAGTCT 000720 000721 ATTCAGCTGC CACCTGGGCA GAGCCTCTCC GTTGGGGCCC CCCGAAGGAT TCCTCCGCCC GGGTCCCAGC CGCCAGTCCT 000800 000801 GAACACCAGC AGAGAGCCCT CTCAGATGGA GATGAAAGGC TTCCACTTTG CCGACAGTAA ACAGAATGTC CCTTCAGGAG 000880 000881 GCCCCGTGCC ATCGCCACAG ACCTACAGGC AAAACAACGA GTGGATGAGA AACCCAGCCT GGGAGCCGTG AAGCTGCAGG 000960 000961 AGGCCCCCTC GGCTGCCTCC CAGATGAAGC GAACCGGAGC GATCAAGCCT CGGGCTGTCA AAGTGGAGGA GAGTAAGGCC 001040 001041 TGACAGTGCC TGGCTGCCAC CTCGCCTCTC CCTACTGAGG ACGGTGCCGC CATGCGGCCT CGACACAGCC GACACTCGGG 001120 001121 AGCCTCACCA GATCCACCGT CCAAATGCGT GGCCCAGACT GAGAGACCTC CCTCCTCTCC ACTCCCGAAA GCTCCGTTGT 001200 001201 CAACCAGCTT GCACCCGTGG ATATATGGCA TTGACCCGCT TGCTTTGATA CGAAACAAAA AAGCAGACGA CTCCTTCATC 001280 001281 CCATCTGCTC CTACCGTGAC TGTGGAGTGA CGCCTCCTGT GCAGTGCAGA TTTGCCCTCC CTGCCTCCTC CCTGTCCTGC 001360 001361 CGCGCAGCCA GGGCGCCTTC TCAGCAGTGC TTCCGGCCCA GCCGCCCATC CCTAGGCACA GTGATTTGGC AGCAGGGTCA 001440 001441 TTTTACTTTG AGGCTTTTTG TTTTAAAATG TAGCCAAGGT TTTTACAAAG GGGAAAGGAA AAGAAAACAA AAACGCAAGC 001520 001521 TCCATGTGTA TAGCTGAACT TTTATATGTT TCTTGCCAGC CCCTCCGCTC CCTTCCATCT CTAGCCTCTG TCCTGTTTAG 001600 001601 TTTGATACGT CACTGCAGTA CCTTAAGAGG TGACTCTTAA GAATGCATCC CCTCCTGATT CCTCAGCTGG TTCACCCTTG 001680 001681 AGGTTATTTG CAAAAAGAAA AGGAGGTTCT TGAGGGCACC GATTGCGAGC ATTCTGGTGC CTGGCTCCCC GCCTGGGAAG 001760 001761 CGATGGGGTG CTCAGAGCAG CAGGCAGGTT GGGGGAGGGG GGGGGTCATA GTTGGGTTCC AGCTCCTGGC TTGATGAGCC 001840 001841 CAGGGCGCTT ACAGGCAGCC CATGAAGTTG ATGACAGTTT TAGCATGAGA ATCACACAGG GTCCCTGTCC TGGGCTCCTC 001920 001921 TAAAGCCAGT GGATGTGCTG GGCACCAGAG ACAAATCATG GAGATGGCTG CTGGTGGCTC CCAGGTTGGC CCAGATGGGG 002000 002001 TGAGCTGACA TACCACAGGC CCATCCCAGG CCCCGTGGGC TCTGCTTCTG GGGCTCCATA CCCTGCCCTG CAGGGGTGCT 002080 002081 GTGTTTTTCA CACATTTCTT TCCCTGAAGC CTTCTGTAAC CTGTCATTTT CCTTCCTTCC TCTTCCGGAG CCTGCTGCTT 002160 002161 TCTCTGGACC TGTCTCCACC TCCCACACAG CTCATCGTGA ACACCACTTG GTGATGGAGG GAGTGGACCC GTGTGTGGTC 002240 002241 CCCAAGTGAG GCCACTGGGA GTTTGTCCTT TTCCTCCTTT GCTTCACTCC CAGCAGCAGA CCCAGGTTGT CAGGACAGGA 002320 002321 GGGCCTGAGC TAAGCAGTAG GCATCAGTCT CGTTTGTCTT CAGACGGCGG GGGCAGGTCC AGGGTGAGGC TGGGTGGAGG 002400 002401 GCTGACCAAG GTCCAAAGGG CCTGCGCAGC CTCCGGGAGG GCAGCTTCTC CAGCCAGAGG CTTGTGTGAG CCATCGTGTG 002480 002481 CTGGGCTTGT TTTTAAGTAA GAAACAAGGA AATCACTCCA GATTCTGTCA TTCCAAGGAA AGGGAAGGGG ACAGTTCAGG 002560 002561 TTTCTCAGCT GTTCTTAGGG GTCACTGAGC GTCTACCTCC TCCTCCAGAG GAGGCTGGCT CAGAACACCT AGAGGAGGGG 002640 002641 GCCGGGGATG CACCCCCCAC CAGAGGCTGC CTTCAGCGTC TCACGGGTGC AGGACAGCGC TCAGGCTTGG GCTCTAAGCT 002720 002721 CTGTGTCTAG TGTAGAACAT GGGGAAGGAG CATCTTAGGA ACTGCTGAAG TAACTTCTTA CTGCTCTCAC AATTCTAAGG 002800 002801 AAGCGGGAGA ACGGCCTCCT ACCAACAGCG CCCACCCCAG AGCTGCCTGG GAAAGGGCAG TTTTACTGAA AGGTGCTTTA 002880 002881 CTGTTCACCT GCATCTTTCA GCAGCTCCCC TCCTGCCCTC ACCTGGTCTT TTCCCTCTTT ATCCCAAGCC TTTATGCTTG 002960 002961 AGTCCCTTCC CCAGGGGCTG CCCACCCGAC AGTTCCAGGC ATTCCCTACC TGAGCTTCTT GTCTGCTTTT CCTTCTCCCA 003040 003041 CTGCAAGCGG CTGCTTGTGG GGCCTGGGAT GAGCCCTCTC TGTCCCCACC GGCCCTCCTT GCCAAGCCAT TCCTGGGTGA 003120 003121 GTTCAGGCCT GCGGGAGCCA CACATTCATC TCCACCTGGA CACTTGAGCC GCATGGCCAG ACCCCTCCCA CCTGATGCGG 003200 003201 TGGTGCGTGT GATTTGTCAA AAGAAAGCCT TCTGGATGCT GTTAAGATGT ACCCTTCAGG TGAACCTGGT ATCAGACCCA 003280 003281 CAGTACTTGC TGTTTGAGAA AAAATAAAAA CAAAAAGGTC ACCTGTTCTC CAGCCCTTTT CTCTTACCTG GTATTTCCTT 003360 003361 CCTTTCTCCT CCCCCACCCC AAATAAAAAA ACAAAAAACA CTAGAATTTA TTTATATGTA TTGATGTTGT AGGTCTAGGT 003440 003441 GAAAAAAAAA GAAGTAAATG TTTCACTGCT CTATTTATAT ATAATGTCTG AATTAATTCT GTGCAGGAAA GGCCAGGAAA 003520 003521 TTGCATGTGA AGTTCGGTGC AGTCACCACC TGTGTGTGAC CTGAGCTGCA GTCTCTTCGC TGAGATGCAG GTTTTAAATG 003600 003601 AGACTTGGGG GGCTGAGGGC AGGCCTCAGG CCTCCCAGCG CCCCAACCCC TCCTTGGTCT AATGAAATGC AGTTCTTAGT 003680 003681 GCAGAGATGT TTTAAGGTGC AATATATCTC TTCCTTTCCC GTGGTTTTAG AGCCAAGCTC AAGGTAGTAG GACGTAGGGT 003760 003761 CTTATTTTGT TTTCAAACCC CCATCCTCAG AGCGCAGATA CATGCAGAGG CTTCTGCCAG GATACCACGG GGCCTTAGTG 003840 003841 GGAACAGGTG GAGACCAGCA CTTCCCTTTC CTGCTGCTGA GGTAGGGATT GGGGGGTCAG AACCCACTCA CTTTTGCCTG 003920 003921 TTAAAGTTGC CCTCCTGACG CTGGCAGCTC TGCCTTGGTC ACTGGGGATG CGGCTCGTTG CTCAGCCACC AGTGGCCTTG 004000 004001 CGGTATTGTC CACCATCCAC TAGAGTGGGA TGAAGTCCAG AGTGTGGGTA TACATCTCAG ATGCCCATCT ACCCACTGGG 004080 004081 GACTTCAATG CCAGCTGCAT TTGGTTTGGT TTTCTTAACT GTTGGCTTCT CCCCACAGCG TTTTTTGTTT TTTTTTAAAC 004160 004161 ATTCATATTG TTTTCAAACT TGGAATTCAT AGACACTCTG GCTCTAGGTT CCTTAAGGGG GAAAACAAAA GATGACTTTA 004240 004241 TTTCACATTC AAGAAAATCA GTTCAGTTCC AAAGCTGTGG TCCTTCCAGC CACTTCTAGG GACACTGGGG AACCTTGTTA 004320 004321 AACGTTGACA TCAGTGCTCT CCAGCCGTGC TGTCACCCTC CTATCTTCTG GATCTGCCTT CGCGATGGTC AGTGACAGCT 004400 004401 TCTGGAAGCT GAGCACACAC AGGTGCACAG CCATGCTGTG GTCTGGCCTG CTACGGCAGC ATGGCAGCTC TGGTGGAGCC 004480 004481 TTCTCCCTTG CCATTTGGTT CCCCTGTGCC AAGTAGCTGC AGGCTGCCCC TCAAATCTTC ATTTGTCCCT TTTCACTTCC 004560 004561 TGCAGAACAA GCCTGGGTTA GAGGGTCTGC TGGAAATGGC CTTTGAAGAC CAAGGATACC AGGATGTGTG CACTCTGTCG 004640 004641 TGTTCTGTGA TGAATGGGAA ACGTAGGCTT CCAGAAAGCC AGCTCTCTTC TGAAATGTGA CGGACCTAAG CAGGAAGTCA 004720 004721 TCCAGGACAG GAGTGGCTCA GTGTTGGGGA TGGACGCTGT CGCCCAGCCA TGCTCCACCA GGGCCACCAA TGTGTAGTTG 004800 004801 GCTGGTGGTC TTCGGGCATG TGAGACCTGC TCTTCACTGT TTCCACCCCA CTTGGTGGCC TCCAGGATGG TAGTGGCACC 004880 004881 CTCAGAGCCC CATCTTCAGC ATGTTCTGAA GCCTCAGAGT GGAAATTCCT GCTAAGGCTC TGTGTGGACG CCTTTCTCCC 004960 004961 GTGATCTAAA GGGGACACTG TACTCAAGCT TTTGACCTCA TGCCTTGTGT AGTAAAAAAG GATTTGGGGG TTTTGTTTGG 005040 005041 TTCCTGAGAG GGttgtgttt tgtttttgtt tccttttgtt tatgttttgg cctttcctct ttgtctttCC ATGTAGACCA 005120 005121 GATATTTGAA AGGGCAGACG ATGGCTAGAG GTGTAATGTG CAGCTTGTTT ATACGGTATT TTGGGAAACT TACCTTGGAT 005200 005201 GGGAAATCGA ATCGTGGATT CACCAGGCCG GTGCTGGCAC ACTCACCCTC GCCCTTTCCC TCCGGTTCAG TACCTATTGT 005280 005281 TTCTCCTTTC AAATATGTGA TTGTACTAGC TCTTTCCATA TGAAAGAATT CTCCTTATTT AAATAAAAAA AGTTTAAAAA 005360 005361 GATAAA |
Predicted Small Protein
Name | NONHSAT135219_smProtein_566:859 |
Length | 98 |
Molecular weight | 10522.9478 |
Aromaticity | 0.0412371134021 |
Instability index | 60.5680412371 |
Isoelectric point | 8.76922607422 |
Runs | 13 |
Runs residual | 0.00248186330661 |
Runs probability | 0.0403027461851 |
Amino acid sequence | MNLKCMCGRSLVRLGFLHSIIPPPDCHCRPAADHATASVRLRAAATDPAPVYSAATWAEP LRWGPPKDSSARVPAASPEHQQRALSDGDERLPLCRQ |
Secondary structure | LLLEEELLLHHHHHLLHHHLLLLLLLLLLLLLLHHHHHHHHHHHHLLLLLLLLHHHHLLL LLLLLLLLLLLLLLLLLHHHHHHHLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |