NONHSAT052091
Revision as of 06:24, 13 October 2014 by 73.162.128.239 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT052091 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
6088 nt |
Genomic location |
chr16+:2318505..2324592 |
Exon number |
1 |
Exons |
2318505..2324592 |
Genome context |
|
Sequence |
000001 GCGGGGTGGT AGCACAGGAG GGGTTCGCAG GCTCTGCGGC CGTGCGTGGC GGGGCGTGGG GGCCCGCAGG GCGGAAGTAG 000080
000081 CTCGGAGAGA CGGGCTGGGG CAGGGCGTGC GTTCGTGCGG TCAAAATCCA CTGGTGGCGT TTGGGGTGTT CCCGTGGACG 000160 000161 CGGCCTCCCG GCAGGCGGAC CTCCACCGGG TGGGCGCGGC AGGCGGGCTG TGCGGGCAGG AAGAGCGACG AGCTTGAGAG 000240 000241 TGGGAGATGG GGTGCAACGG CGGGCCTCTC CGGGGAGGTG ACACTGCCGC TGAGACCCGA ATGGAAGGGC GCGCCCGGCG 000320 000321 GGGGAACAGC AGGCGCCGAG GTTCGCTGGA AGCAGGGAAG GGAGGCCCGG GTACCGGCTC GCAGGCCCGC GCGAGCTTCG 000400 000401 CGGCAGCGGC ACGGAGCGTG TGAACGGCGC AGCGCCGAGG CTTCATCCAT CGGCCGGTGC AGGGTCCGGG CAGGGAGCAC 000480 000481 TGTCGACCAG GGTCCGACCC TGGGAGAGTC CAGAGGTGGC GCCTCTGGCA GGGACAGAGG AGGGGGTGAC GCTGTAGGGG 000560 000561 TGCAGGCAGG AGGCTCCGCG TCAACTCCCC ACACTGACGG GGCGGAtttt tttttttttt tgacagagtc tcgcactgtt 000640 000641 gcccaggctg gagtgcagcg gcgcgatctc ggctcactgc aacctccgcc tcccgggttc aagcgattct cctgcctcag 000720 000721 cctcccgagt agctgggatt acaggcgcac actaccacac ccggctaatt ttttttgtat ttttctggta gagacagggt 000800 000801 ttcactatgt tggccagact ggtcgagaac tcctgacctc gtgatccgct cctaggttcg ccttggcctc ccaaagtgct 000880 000881 cgctcctggg cgtcccaaag tgctgggatt acaggcgtga gccaccgccc ccggccGAGG GCGGGTTTTG TTCTCTGCTG 000960 000961 TGCCTGTCAG GCAGTCGTTG CCCTGTGGTT ATTTGTGGAG GGATTGACGG TGCGCTGAGC TTCAGACTTT GTCTGAACAG 001040 001041 CTTCGTGGCA GCAAGGAAGG GAGAAGGGAA CAGATCCAAG CCGATCTTTG GGAGGAGAGA ACCAGCATGA CTTGGAGACT 001120 001121 TTAGATGTCA GAGCAAAGGA CAGGGTGCAG CTTGGTGACC CGGAGTGGGT GGGTGGGTGA ATGGATGGAT AGATAGTGGG 001200 001201 GATGTGGTCT GCCATCACTG CCCTCTTCCC TGTGTGGGAA GCCAGCTCTT GGTGACTTCC TGCCGAGACC CACTCCCTCT 001280 001281 GGCCCTGTCC GAGGGTGTCA AGTGTGCCCT TGACCCTTCA CCCTGGGCTA AGGGATGTCC AAGGAGTTGG GGACAAAGGC 001360 001361 AGCTAGGAGG AGGAGCTACC TCCCGAGTCT GCTGCAGTAA GTCACCAGTG TGTTCCTGTG GGTGGAGGCT GGCAGGCCCA 001440 001441 TCAGTCTGGT TTGGGTACCC GTTGGATTTG GGTTTGATGA CATGTAAAGT GAGTTAGAGT CTCTGCATTA CTGTCACACC 001520 001521 TGCTGTGCCC AGGCATGGAA GATTAAGTGG AACAGAGGGG CCGCCCCCCT GCTGAAGGGG CCCCAGAGTC GGCGCTAGGG 001600 001601 GAGGGGGCAG CCTCGGTGGT CCAGGCAGGC ATAGGCGGAA TTCTCTGAGG TGGCATTGGA GTCCAGTGGT CAGAGGTGCT 001680 001681 AAAAGGCCCC AAACCTAGAG CCCATGCCCA GGGCCCCACT GACACCTGGT GGGCAGGGGC AGCCTGGTGA CCCCACATGA 001760 001761 CATGGGTGGG CGTGACGCAG CACCAGCTGG GCCGACAGCC CTCCCCCTGC TGGTTTTTAA TGCTCTGCAG TAATGTCATT 001840 001841 TGGCCTGCGA ATAAGCTTTC ACACATTTTA TATTAAATCT ACAAGTATGA TTTATTCAGG CACTTACGAA TTTAATCAAA 001920 001921 TTTGTTTCTA AATATTACTG ATTTTTGTTA TCAAATGTGC CATCAGCTGT TGAGCTTTGA GAATTGAGCA TCCTGGCTTT 002000 002001 TGCCATTTTG AGGATCAGCA GAAGCATGTC TGGAAGAAAT GTGAGAAAAT AAAACTCAGG AGCCTACCCC CACCCTGCCC 002080 002081 TTCCAGGAGC TCAGCCCCAG AGCCAGGCTG CTAAGGCCAT GGAGGCTGAG GGCAGTGGAG CTGGGGTTTC TGGAGCCTCA 002160 002161 GGGGCCCTGG TTTGCTGGAA GGGCAGGCAG GGCTTCATGG AGGGCATTAG GCAGTGGCCA GAGCCCTGCA GTGCTGGGCA 002240 002241 TGGGCTTCTC GTGGGCTCTG GCCACGGCCC TGAGCTCCTC CCCTTACCTT CCCAGAGCGG AGGGTCACCT GCTGAGCTGG 002320 002321 GCACGGGCTT CTCGTGGGCT CTGGCCACGG CCCTGAGCTC CTCCCCTTGC CTTCCCAGAG CGGAGGGTCA CCTGCTGACA 002400 002401 GTTTGGGGCG GCTCTGTCTT TGAGAGCATG CCCTCATGAA GGCAGAATGT CCTCCCTGCC TCCATCCTCT GTGGCCCGGT 002480 002481 GGCTCCTGCA GTGCCTGCCC TCAGAGGCTG GTGGCCTGGG ACACAGGGAT GAGGATGGGC TTGGTGGTGC TGCAGGTCAC 002560 002561 AGTGGGTCAT GAAGGAGCTT TGGGGGTGTT GCATTCTCTG GTAAAGCACA GCAAGGGAGC CCTTTTACCC ACTACTAAAA 002640 002641 CCTGGCTCTG CACTGAGGCC ATGCGCAGCC CAGTCAGGTG GACGAGGGGG TAACGACTGG ACCGTGGGGA GGCATCAGAG 002720 002721 GAGGAGCTGC TGAGAGGCGG GTCACCACAG CCTGGTGCCT GTCTGGAGAG GGTGGGGCTG GGGGAGGTGC TGGCCAGGTC 002800 002801 CATGGGGGTG GCCAGGCTGG GTCTGAAAGG GCCTTGCGCT GGTGTGGGGT GAGCTTGGTC TGTTGGGAGA GTATGCAGTT 002880 002881 CATTGGGGCC TCCCTGGCTC CAGGTTTGCA TGTCTGAGGA GTGGGTATCA TCAGGGCCTG GGGCCTCTCC AGTGGGCATG 002960 002961 TCTGAACTCT CCCAGGGTTG GGAGCCTGTG CTCATCACAA GCTCAAAGCA CTCCATTTCT GCTACCATGA AGTCAAGGAT 003040 003041 GGTGACTGTG AGCCGCCTGG GACCTGAGCT GCCTGGGACT GTGACTGAGG CACCCGGGGT GCCTCTTAGG GCCTTGGGTT 003120 003121 TGGGCCCATG GCTAGATGAG CCTTGGTGAT TCTGTGGTAT TGCCTGGGCC AGGTGGACCC AGGGGCAGCT GCGGCTAGTC 003200 003201 CATTTGGAGC TCCTTCAAGC CGAAGCATCC AACACCAGTG TCTGTGAGGT GTGGGCCCGG CCCCAGGAGC GGGGCCTGGG 003280 003281 CAGCCCCGTG TGTTGAGGAA GGAAGGCAGG GCCCCCGCTC CCCGGGCCTG ACCCCACTGC TTCAGCCCCC TCCTGCCTGC 003360 003361 CTACAGCCTG GCCTCGAGGG CCCATCAGGT GAGGGGACCC CACCTGCACC ACCCCGTCCT ACCTCCTGGA GGAGGCCTTG 003440 003441 CCCCTGACAG GCAGCCTCCA GCCCTCCCAC CCTGATCCCT GTGTGGGATG GCCAGAGCAT GCCCAGCATG CTGGGGTTCG 003520 003521 GCGGTGGGGG GCATCTGGAG GGAGGGACAT GTCAGTTCGG GGAGGGATGA GCAGCCTAAG TGACTGCAGT GCTGGGCCAT 003600 003601 CTCCTGCATG GTGGAGCTCC CCTCGAGCCG CCTGTCTGCA GGGGGCTCTG GCCAGTAGTG CAGCCGGGCA GGGTCTGTAC 003680 003681 GGCACAGGCT GCACCAGCCT CCATGCAGAC CAGTCTGTGT GGGAGTGGGG GTCTCAGAGG GCCCAGCCGG CCTATGCCAT 003760 003761 GAGCATGGTG CTGGCCCAGA GGGGGAGCTG AACAGCAGCT GGGTCGGTGC GTTACCTGGT GGGGCAGCAG ACAGCAGCTG 003840 003841 CCCTGGCTGG GGTTCAAGCC CCGGGCTGGC CTGGTGGAAT CCCCTCTCCG TCACCCCCAG GTTCTGTTCT TGCAGGTGTC 003920 003921 AGGCCTGGGG CCTTGAGACA GACCTGCAGT CTCCACCACA GCCACAGTGG GTGGGGTCTG GGTCCTCACG GAGGTGATCC 004000 004001 TCCACCCCCA CACCTACCTT GTGCATGGCA GTGGTGTCTC CTGGAGCTGG TGAGACCCCA CCTCACTCAG GAAACCCCCC 004080 004081 AGACGCCCCC AGGCAGAAGT GGCCATACTC CAGGGCCTGC ATCCCTGTGC CCCACAGTGC GCCCTGGCCG GTTGGTTGTA 004160 004161 GGAACTCAGA AAAGCAAAGC AAACAGGATG GTTCCCTGCT GGACACATTA CATTCCCTGC TGGACACATT TCTATTGCAG 004240 004241 ATCTTTAGTC CAGGATTCCA GGGTAGCCAA GGTCACCTGA GTCCTGGGGA CTCTGGGCCT GGTCTCTGAA AGCAGCCAGT 004320 004321 AAGACAGAGA TGGGAAACCC AGCAAGATGG AGTGAGCCAA GGGCACAGTT GGGTCCAGGC GCAGCAGGGA GCTGCCTGGG 004400 004401 GGTGACACAC ACTTGACGGA GGCCACTGCA CACACCCTAC CCCGGCCTGA ACTTGAGCAC ttcctttttt tttttttttt 004480 004481 tagatggagt ctcactgtag tccagatgga gtgcaatggc gtgatctcgg ctcactgcaa gctccgcctc cccggttcac 004560 004561 gccattctct tgcctcagcc tcctgagtag ctgggactac aggtgcccgc caccacaccc ggctaatttt tttgtatttt 004640 004641 tagtagagac ggggtttcac cgtgttagcc aggatggtct tgatttttcg acttcatgat ccgcctgcct cggcctccca 004720 004721 aagtgctggg attacaggcg tgagccacca tgcccggccA AGCACTTCCT TGAACACAGA GGTgaccatg aggagggagg 004800 004801 cgtgaaccag gatgacgggg cagcagatgg agcctgcctc cctgagacct caggtgaccg agtgctggac tgcctcctcc 004880 004881 tgcctacatg gctgagaaat aaacttcttt ttcaaaccac tgtgacctgg ggttttctga taccctcagc aagcctgttc 004960 004961 ctGTGGCCTG GTGTGGGTCC CCTGACCTGT GGCCTGGGCT GCCTGTATCC GGCCTGCCCC TCTGCTCCGC TGTAAACCTG 005040 005041 TGATGGCAGT GGAGGGGCTT GGCCTGGGCC CGCCCCACCG CGAGGTCTTC CCCTCTCCGA GTTCTGGGTG TGGTTTCAGT 005120 005121 TGAGCCACGC CGTTGGACTG GGCCGGCCTG GAGGACAGAA GGCACAGGCT CTTCCACATA CCTGGCTCGT GGCCCATGGG 005200 005201 CCGTCTGCTC ACGGGAGCCC TGCACCAGGC CATGCAGAGC AGTGAAGTCA AAACCTCGTT TCCCAGGTCT AAGGTGAACT 005280 005281 GGGAGCAGGG CAGGAGTTGG CTCTGTCAGA TGCCACAGTT GTTTGGGGAC AGTGTCCGTA GAGAATGTGT GGCCCCCCTC 005360 005361 CGTGGTCTAG GGTGGAGCGT GGATAGGCCG GTCACTCCTA TCCCTGGGCC CAAGGCTCTT TTCCCCTGCC CTCCCGTGGG 005440 005441 CTGGGAACTG CCACAGCTCA GACAAAAATC GGCCAGGGCA GGGTCCTGAG GCTTCAGTCC CAGGCTCCTT AGGGCACCCC 005520 005521 TGGTGACCCA GCTCCAGCAC TGAGTTTCCA GAGGCCTTGA GGATTTCCCT GGGATGCCAG ATGGGCCCTT CCTGCTGCTC 005600 005601 CTGGGGTCAT CTAAGCTCCA GGCTTGGGTG CAGCCCTGGG CCCCTGCCAC AGACGCCCTG AATGCACCTG CCCCTCCCGG 005680 005681 TCCCCACGCA GCAGCCTCCT GAGCTGCGGA TCATTTTCCT AAGAAGGCAT TCTACTTGTG CCAGTCCTTA CTTAAAGACC 005760 005761 CCTGCTGGTG CTGGCAGCGT GCTACCGGGA AGGATGGTAT CTCCTGTGCG TGTCCTGTGT ACGCTGGCCT CACACGTGTG 005840 005841 TGCCTCATGC GGGCTGTGCC CTCAGTCCTA TACGCTCTCC CCAACCCTCT TTTAGGGTGT CACAGGAGAA AAATGACACA 005920 005921 TTCCTAAATC TCTAACACAT GGGCTTGAAA ACAAGTCTGA GGATGCCCTG CAGAAGGGCC ATGGGCATGG ACATGGAGCT 006000 006001 GGGTGGCCTC GTGCACTGAC CTTTCCCTCT TCCTAGCCCC AGGCCCGACC TAGAGGCCAC AGCCCCTGCG GACAGGCTGT 006080 006081 GGGGCCAG |
Predicted Small Protein
Name | NONHSAT052091_smProtein_5195:5488 |
Length | 98 |
Molecular weight | 10754.3849 |
Aromaticity | 0.0721649484536 |
Instability index | 64.8804123711 |
Isoelectric point | 10.412902832 |
Runs | 13 |
Runs residual | 0.00248186330661 |
Runs probability | 0.0392632451456 |
Amino acid sequence | MGRLLTGALHQAMQSSEVKTSFPRSKVNWEQGRSWLCQMPQLFGDSVRRECVAPLRGLGW SVDRPVTPIPGPKALFPCPPVGWELPQLRQKSARAGS |
Secondary structure | LLLHHHHHHHHHHHLLLLLLLLLLLLLLHHHLLEELLLLLLLLLLLLEEEEEELLLLLLL EELLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHLLLL |
PRMN | - |
PiMo | - |