NONHSAT001952
Revision as of 06:48, 13 October 2014 by 73.162.128.239 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT001952 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2238 nt |
Genomic location |
chr1+:28832455..28837404 |
Exon number |
3 |
Exons |
28832455..28832596,28834640..28834672,28835342..28837404 |
Genome context |
|
Sequence |
000001 GATTCTCTAA CTGCGCATGC TTCTGCGCAC GCGCAATAGA CATTCCAGGA CTTCCGGGCA CTTCGTAAGG TTTAAAAAGG 000080
000081 ATGCTTCGCG TTTTCTCTCT CCTTTTTGGA GACAGATTCG CAGTGGTCGC TTCTTCTCCT TGGATTTGTT AAGGATTCCA 000160 000161 AGTAACTCTT ATTTGGAGAG AAGACGATCT GCACTTCGCA TTTTGGCATT GACATTTAAT TTTAGGGTCC TTTATATAGA 000240 000241 AGGGAGAGTA GGTAAACTGA TTTTTTTTTT TAACAGGGAG GGTTTGACAA TCTTTGGCAG ACTTGGAGCA AAAGATTGAG 000320 000321 GTGCATTTCA TGCCTCCttt tgagagtctt gctctgtcgc ccaggctgta gtgcagtggc gcaatcttgg ctgcaacctc 000400 000401 agcctcccaa gtAGCTGGGA TTACAAACAT AAGCCACCAC GCCCAGCCCT CATACCTCTT TTAAAAGTCG ACCTGTTTTG 000480 000481 CAGAAAGTCT GCTGTTTTTG TACTAAAGGC TTTGGAATTT GGCATTTAGC TAGGAATGCA CATTCTTTCA CCTCATTCAT 000560 000561 ACTTTAAGAA CCACAGAAGT GACTCTGCTT GGCCAGAAGG CACACTGTGT TGGTGGTTAT ATTAAAAGTC CTTGAGTATT 000640 000641 TTGCTTTTCA Tgatcttgct cactgcaact tccgcctccc aggttcaggc gattctcctg cctcagcctc ccaagtagct 000720 000721 gcgactacag gcgtgtagca ccacacctgg ctaatttttg tatttttagt agagatgagg tttcaccata ttggccaggc 000800 000801 tgttctcaac tcctgacctc gtgatccgcc cacctcagcc tcctaaagtg ctgggattac agctgtgagc caccctgccc 000880 000881 ggccACTTTT GTATGATTTC TAATGTATTT GTAATTTACC TAACAAATTG CCTAATCTGC TATGTTAATG TATTTATGAA 000960 000961 TTAAAATAAA TACGACTGCA TGTTTGTGGT TCATTTTTGT GGAGGTGGCT GTGGTGACAT CAGCCAAGAA TCTGAATGGT 001040 001041 ACTGTTGAAG GAAACTAGCA TGATAGCTTC AGTTCTAAAG GCCCTGAAAC CTAGTCTCAG GTGGGTCCCC CTTGGGTTCA 001120 001121 CTTTATATTG GCAGTTTATT GGGAAAATGG ATATTAGGTC CTGACCAATA GGACCGTAAG TCTGGGTTGA GTGCAAGATG 001200 001201 AGTTAGACCG ATTCTTTAGC TTCCTGCAGT GTAGTGGAGG AAAAATCGAT GGTAGCAACG GGAGGTTGTA TCCCTAGCTG 001280 001281 ATGAGTTGTA TGAGCCTCTA CTACCTGGCG CACCTCCGCC TGAAGATTGC CAGAATTGCT TGCCTCATGA CGTGAGTCAC 001360 001361 AATGGAAACT TTGTCAAGCC CCCTGCACTG GCTGCCAACA TAAATGTTCA GTACCCTGAA GGATGGGACT GAAGGGGGAT 001440 001441 CATCTAGAAG GTAAAGTTAC CTACTGGCAT AGGGGAGGTG GGACAGCCGT TAAGCCATTT GGAACTTGAT GGAGACAGGT 001520 001521 TTGAGGGAGG TGGGTGAGAT TGGAGTTTGG TGGACTGTAG AGCTTGCTTG CCAAGGTGTT GAGGTCAGGG TTGGTTTGAG 001600 001601 AATGGAAGCT AGTTACTAGC TATGATTGTG GGGGAACACA GCTTGATTTT TCTTACAAGC TAAGAGGAGT GAGGCAGTGT 001680 001681 TTAAGAGGGC ATGTTAAATG CAgccaggct tggtggctca cacccgtaat cccagcactt aggctaaggc aggcggatca 001760 001761 caacatctag agatcctggc caacgcggtg aaaccctgtc tgtactaaaa atacaaaata actgggcatg gtggtgtgca 001840 001841 cctgtgggag gctgaggcag aattgctgga acccgggaga tggaggttgt actgagctga gaccttgcca ctgcgctcca 001920 001921 gcctggtgac agagttaagt ctcaaaaaaa aGGCATCTTC CTAAAGCAAT TGTATTTgtg cttacctgtg ccaggcactg 002000 002001 ttctaggTAA GCACTAAGTG GGCTTTAATA CAGCATATTC CAATGGGGAA TCCCAGGAAC CAAAAGACTA ATTGTCCAAG 002080 002081 TCCACAACTA GAAGTGGCAC CTCTGCAGAA ACAAGCATCA AATTCCCTGC TCAGGAAGAA GCCAGATGAG TCAGCCCCAT 002160 002161 TCGTCTGTAT GCCCAGTCCC ATCCGTGTCC TGCTGTAACT ACATAGATCT CACCTGAGTA AAGTGATTTT TTTCTGAA |
Predicted Small Protein
Name | NONHSAT001952_smProtein_2042:2197 |
Length | 52 |
Molecular weight | 5630.549 |
Aromaticity | 0.0196078431373 |
Instability index | 77.8235294118 |
Isoelectric point | 9.69427490234 |
Runs | 9 |
Runs residual | 0.0222286934576 |
Runs probability | 0.0374688413904 |
Amino acid sequence | MGNPRNQKTNCPSPQLEVAPLQKQASNSLLRKKPDESAPFVCMPSPIRVLL |
Secondary structure | LLLLLLLLLLLLLLLLLLLLHHHHHLHHHHLLLLLLLLLEEELLLLEEEEL |
PRMN | - |
PiMo | - |