NONHSAT127721
Revision as of 10:08, 13 October 2014 by 73.162.128.239 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT127721 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1753 nt |
Genomic location |
chr8-:93897579..93978357 |
Exon number |
4 |
Exons |
93897579..93898963,93904217..93904302,93966634..93966792,93978235..93978357 |
Genome context |
|
Sequence |
000001 CCCTTTGGGA GTAGGGGTGT GCGGCTGGCT TGTCCCGCCC CTGCCCCTGA GTGACAGAAC CGTGGACAGC AACATTTCCC 000080
000081 ACAGGACACG AAGTTTGTCG GCCCTTGCCT TGGCAGAGCT GAGTAAGAAA AATCACCAAG AATATTATTT TTGGTATTTG 000160 000161 GAATTGAATT TGCCAGGAAT GCAAGCACTG CTACCTAACT AAAGACCTTG GCTTTGGAAA CATCTTACCC CTTGGCAGCT 000240 000241 CTCCAGAGTT TAGACTTGGC AGCATCAAAG ACACAACGCA AGGTAAACAG GATTATAAAA AAACTAAACC TATTTTACGA 000320 000321 GCAACCAAAT TAAAAGCAGA AGCAAAGAAA ACAGCAATAG GCATAAAGGA AGTTGGCCTT GTACTTGCAG CTATATTGGC 000400 000401 ACTACTACTG GCTTTCTATG CTTTCTTTTA TCTCAGACTC ACCACGGATG TTGACCCTGA TCTGGACCAA GATGAAGATT 000480 000481 AGCTAAGCAA CAATCAATGC ATGAAAGAGA AATAACTTTA CGAAAGCACC TTTTGGGACC AAAACTTTCA ATACTGAAAC 000560 000561 TGTAACATCT TTAATTCTTT CTGCTAATAT TTTCAGTTTG CAGACATATG ATTTTTGATA GTTGCATAGG ATGTCAGGAA 000640 000641 AAGAACCTTA CCTAGCAATG CAGTATAGTA TGTGCTACTG GATACTTTTA TATATCTTTC TGCTTTGACA GCCACCCTAT 000720 000721 ACATGGTACA TTTAGATGAA ATGGGAACCA GATCCTAAAT TTTTCAAATG TCATTGCCAA TTTATGTGTA TAATTCCATC 000800 000801 ACTTCCTGAT GAGTAAGTCT ATTTTTGTTC TATATACATC ATAAGTTAGT ATATATTCTT ATTTACAGAA ACATGCTCAA 000880 000881 ATCACATTCA GAAAGAACAA AAAGTCATGG GAAATTTTTT ATTTTACAAC AAAGCCCTGC TTTCTTTCTG GACGTATTTT 000960 000961 ACATCATTAG AGAGACTATC TGCACATACA TCTACCATAA TCTTTTTCCT TCTTTGCCAA CTGTTCAGTG CACATGTGCT 001040 001041 GCATCAGAAA TGGCACCTGG ATGACAGAAG CTCAAAGAGT CACATATGTC TCTAAAATAG AGTTCTTTTC CTCTTGGGCT 001120 001121 GTCTGAACTG GTGTAAATAG AAGCTCAGTT GATCTTGGTT TTAATTAACT TATTACTCTA TTAATATAAC CTTGGAATTC 001200 001201 TATTCTAATT ATGTTGTTCT GGCTGCTTGT AGTATCAGTT CGCCCCTCTT GTTAGGGAGA TATGTAACAA TCTGTCATTT 001280 001281 AATTGAGCAG TCTTTTTCAC ATAACAGTAA TAGCAAAAAT CCTACCTACT CAGAATCATC TTCTTAGGTT GTCTCCTAAA 001360 001361 TCTGAACAAT ACAGTTGTTT TATAAAATTA CATTTTGTCT CTTGAGATTT AATCAATTAG AACTCTTTAG GGAGAAAATA 001440 001441 AATAATAGAA GAAAATATAT GCCTCATATT TCATATGTAA TTATCTGTTG ATATAATTTT TCAATGTATT TTGTATTTGT 001520 001521 GGGAGCATAA TGACCTGTAC ATTCAATATT TTTACTGGTA ATTCAATTTT TAAATATGTT TTTACAATGC TTGAACACAT 001600 001601 AAACCTTAGA AAACTGGAAA ATACGTGTCC ACAGAAAGAG TTATTAGCTA CTACCTTATG TAAAGATGCA TAGAAAATGA 001680 001681 AATTGTTGGA AACATGTGCA CAAAGTGTTT TATATTATAT ACATTGTATT TATGAAGAAT AAATAAAATA TTA |
Predicted Small Protein
Name | NONHSAT127721_smProtein_872:1063 |
Length | 64 |
Molecular weight | 7216.3205 |
Aromaticity | 0.142857142857 |
Instability index | 74.1414285714 |
Isoelectric point | 7.76129150391 |
Runs | 7 |
Runs residual | 0.0338516358925 |
Runs probability | 0.0414111590583 |
Amino acid sequence | MLKSHSERTKSHGKFFILQQSPAFFLDVFYIIRETICTYIYHNLFPSLPTVQCTCAASEM APG |
Secondary structure | LLLLLLLLLLLLLLEEEEELLLHHHHHHHHHHHHHHHHHHHHHLLLLLLLLEEEELLLLL LLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLL LLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooooooooooooooooo ooo |