NONHSAT092386
Revision as of 12:24, 13 October 2014 by 73.162.128.239 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT092386 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2939 nt |
Genomic location |
chr3-:139397462..139401406 |
Exon number |
2 |
Exons |
139397462..139399830,139400856..139401406 |
Genome context |
|
Sequence |
000001 AGTTTGGCCT TATTTTCTAG CAAAAACTCA TTGCTTAGCT GCATTTAATA ATCCATGGAA CATTTCTATT AACTTCAGTG 000080
000081 TGTGAATTGT GTGACTGCAG AATGGGTAAA AAAAAAGTGA GAATCAGGAA TACAAAATAT GCAGAAAATG AAAATAAGTG 000160 000161 AGATGTTAAA TATTTGATCA AGGCCTTTAT TTTCAGGTAA CCAGTTGCCA TCTTGGGGTC TCAAATGCCA ACAGAAGCCA 000240 000241 CAGAATACTA TTCTGAATTA TTAAAGTGAC TAGGAGAACC TTGTTTCTTT TTACTACTTT TAAATGAGTA TGTAGCCTCT 000320 000321 CAAGCTAACC TTTGCTTAAA CATTTAACAT AGACATTGGG TGAAATATAA AAAAGCAAAA GTTCTCAGTC TAATACTCAA 000400 000401 CCTGTAATTA TAAATCAGAT TACATAATAC AGCTCAGCCA TTTCATTTTA TTTTTCTGTG TTCTAACAAT TTTTTTCAGT 000480 000481 TTGAGAGGAA CCTAACCAAG ATTAGTTGAA AGTCTGCATT CTAGAATATT TTTATCTGTA TGTGTACTGA AAAGTCCACC 000560 000561 AGTCTCCCTT TTACATTTTA CTTTTACCCA CTCAAAGCTT GCTTTTCCTC AGCGACAGGT CAGAAGTCAA GGTTAGAATA 000640 000641 GGTTCATCCA AATACAGAGG CTGCCCCAGT CTACGGCCTC ATCACAATCC ATCCACAAGC AAGCTTTCCA GAATGGCCTC 000720 000721 AGGTCCATCC CAGGACTGTG ACTCTCAGCC ATCTGCACAT TGCTTACTGC CCAAAGAGTT CCTCCTGAAA CTTCATCAGC 000800 000801 ACACTGTTAA GTGATAGAAG GAAACTGCAG AATAGTGTTA TACTGTAGCC AGATCTCATT TTAGTAATGA CATTTTTATG 000880 000881 CCTAGAAATA ATGTTTTAAA TGTTCAAAAA TATGAGCTAA GTGGTCAGTT CCAGCTTTTT TCCCTGTAGA GACCTGTCTC 000960 000961 CTGCAGCCTT GGGTGGGATG ATTCCAAGGC ATGCTCTTCA CACAGTTTTC TAGGGTTTTC CCCTAGGATT AAGCCCTAAA 001040 001041 CATCTATTAT AGTAGCTGGC TTAATCTTTT ATTGAGCTCC CCTTTTCTTC CCTGTATTGC TTCTTCATTA CTCTGCTGGT 001120 001121 GTTCCATGTA CCTCTCAAAT AACTACTTGC ATTAATTCTT ACCTCAGGAT CTGGTTCTGA GGCACTCAAG CTGAGACATC 001200 001201 CTCTATGTAA AATCTTCCTC CTTCCTGAGG TGGCATTAGG TGGTCACCTT CCTTGAGCCA TAATGGCAGA TAGGATCCAG 001280 001281 GAGAAATGAA ACTTACCAAT AAAGGAGAGA TCTGAAAATA TTATTCCCAT TATACCCATA ATCCAGTAGT CTTTTTGTGA 001360 001361 GCTTAAGCAA ATACAAGACT TGCATTTAGG TATTCCTCCT TCTAAAAAAT TAGGAGGTAG TTGCCTCTCC AAAATGGATT 001440 001441 TCTCAGCCAT TGCGTCTTCA CCGCTTAGGT TAGGTAAAGC TTGGCTATTA TATGAGGTTC TTACCTTCCG GCACAAGGGG 001520 001521 ACGCTACTTT TTTAAAAAAA TATTTTTATT TCCATAGGTT ATTAGGGAAC TGGTGGTATT TGGTTACATG AGTAAGTTCC 001600 001601 TTAGAGGAGA TTTGTAAGAT TTTGGTATAC CCATCACCCG AGCAGTATAC ACTGAACCCA ATTTGTAGTC TTTTATCTCT 001680 001681 CACTCCCTTC CCATTCTTCC CCTCTGAGTC CCCAAAGTCC ACTGTGTCAT TCTTATGTCT TTGCATCCTC ATAGCATAGC 001760 001761 TCCCACTTAT GAGAATATAC CATGTTTGGT TTTCCATTCC CGAGTTACTT CACTTAGAAT AACACTCTCC AATCTCATCC 001840 001841 AGTTGCTGTG AATGCCATTA ATTCATTCCT TTTTTCTTGC CTAGGAAACC AGGCTTCCTC CTAGACCAAG CTTTAGTCTT 001920 001921 CACTACCTCA GGCAGAGAAA GCTTCCCTTG CATGAGGAAG TCATTGCCCA GCCTCTTCTC TGCTCTCTGT GTGCAGCTTC 002000 002001 TCCCTCCCTG GCCTAGGGCC CTGACCCAGA ATGACTCTTC AGCCCACGAT TTTAATCGAA GGCCTCTAAT CAACCTGTGG 002080 002081 TACTACATGC TACACAAGAT TCTCAGAAAT CCCTAAGCTT TCTCATGAGC CTCCCACCCT GCTGGGAAAT AAGCTGACTT 002160 002161 ATCAATTAAA GAATATCCAA AGATGTTAAG CCACTTAATC CTCCCCAAAA CTCAGTGCGG TAGGGGTTGT TACCTCCCAT 002240 002241 TATACGAAAG GAAAGTGAGG CTTGGGAAGT AAAGAGACTT GTCCAAGATC ACCTTCTGGA GCCACATTTT ACACCACAGG 002320 002321 TAAGAGAAAA GGGATCCGAG AGGGCACGGA CACTGTGTCT TCAGACTGAG TGGGGAAGTA CCATTTACCT GGGTACTTAT 002400 002401 TGGGTGCAAG TTGCATGCCC CCGGTGCTAA TACACAAGGG ACAAATTTAT GGGCCTCCTA AAACTGTGGA CAGTGCACCC 002480 002481 GTCCAGCCAA CTTCATGGGT GCACCGTGAG GCTCTGGTGA TGTGGACAGG CTTATAAAAC ACTCTCCATA CTAAGATGAG 002560 002561 GTTGTGTTCC TGTGTCTAGG AAACGCTGGA AATTAAGTGT ACAGCAATCA AAAAACCTTG ACATCATCCT TGATGTCTCT 002640 002641 CTTTTTCGCA CACTCCAATT CACTCCATTA GGAAACTGTA TTGGCAGAAT CTAGTGAATC TTGTCCTTCA AGGCCTCTCT 002720 002721 CTGCAAGGCT CCCATGAGCC CTGGGGGCTT ATGGAGAGTT CTGGGTGGGC AGAGGAAGCC AGACTGCGTT AGGGAAGCAA 002800 002801 ATTTGGGACC TAAATTTCCT AAGAAGGTTT TAGGGGATAG GGACCCCAAT CTCTAAGACC CCAGGATTCT GTTAAGATTT 002880 002881 ATTTTCTCAT TCCAAATAAA TGTCCACTGG CAAGCCCTAA AAAAAAAAAA AAAAAAAAA |
Predicted Small Protein
Name | NONHSAT092386_smProtein_2414:2536 |
Length | 41 |
Molecular weight | 4438.1792 |
Aromaticity | 0.075 |
Instability index | 47.44 |
Isoelectric point | 8.29449462891 |
Runs | 7 |
Runs residual | 0.00302419354839 |
Runs probability | 0.0130088071265 |
Amino acid sequence | MPPVLIHKGQIYGPPKTVDSAPVQPTSWVHREALVMWTGL |
Secondary structure | LLLEEEELLEELLLLLLLLLLLLLLLLHHHHHHHHHHLLL |
PRMN | - |
PiMo | - |