NONHSAT092544

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT092544

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

3389 nt

Genomic location

chr3-:145767418..145770803

Exon number

1

Exons

145767418..145770803

Genome context

Sequence
000001 GGCCTTTTTT TTTTTTTTTT TTGGTTAGAG AGACGAACTC TCCTCTCTCA GAGTTTTCGG TACCTGCCTG GTTGCCATGA 000080
000081 CTACCACCAC AAAGTTGGAG ATTCAGGAGT GAGGGTTGCT GTAAGCAAAG TTGAGGAGAC AAGAGAAGCT CGGGGAATTC 000160
000161 CCCCAACTTT TTCTGCTTCA TAGAGACTCT ACTTCCCATG CACAAAACCA AAATAAATAG AATCATAATT TTAAAAAAGT 000240
000241 GTATCTTGGA GCTCTTCCTG TCTGTGCCTG GTACATTATC TATTCTGGGA TATTATCCTC TAAGGCAAGG AGATATGGGT 000320
000321 GGAAAAAGAG GAAAACAAGA AAACTCCCCA CTGGATTGCT TGTACTTTGG GTTCTGGATT TCTTGCTCAA TCCCCCTGCT 000400
000401 ATCATTTACT TTTCAGAGTT CTCAAGTAGC TGCTTCATGC ATTCTGTGAA GGGCTCTTGA TTTCATTCAG TTGAGACAGA 000480
000481 ATTCAGTTAC TTTATCTCCT TTGGATCTGA AACTGTCACT TAAGTTGAAG TTACTTCATC TTCAAAATGA ATGTGATTAA 000560
000561 TACTTGCCCT TTCTAACTCA CAACATATTT ATGGAAGTAA AATAAAATGG CATATTTGGA AGTATCTCAT AAATTGTGTG 000640
000641 ATAGTGGTAA TATATTGACC TTTTAATATA TATACACATA GTTTGAATAT ATTTTTTCCA TTTCAACTTT ATCATTCTTG 000720
000721 GCAATTTCCC AAGTAGAAAC TGCCATGTTA TGTAACTGCC ATTATGTTGT CCGAAAAGTT GGGAAACCCT ACGATAAACA 000800
000801 AAGCTAAACA GATTTACTTA CTGCAAGACT TCTTGAAGTC TCTGATAGGT TAATGTGCAT TTTGAATTCC CAAGATATAA 000880
000881 TTGAACAGAT TTCAGAATTT ATCTCTCAGC TGTTTTATCT TCTATTGGTC TCTTAAACAG AAATAAATGC AGAATGATTA 000960
000961 TTTTGTAAGC ATTCTAGAAA ATTCTTCATA TTTAACATCA ATAAGAATGT TGTAAGCTTT GGCAGAACCT TTACTCCCCC 001040
001041 TTTAAGTCAC CTTTCAAGCC TTGCTCATAG ATAGAAATAT GGCTAAAGAA AGAAAAGATA TTTCGGAGGT AACACAGGGT 001120
001121 TTTAAAGAAA CACACAGATG CAAAGCAAAA TATTATATAT CTGCATATCT TCCTGATGTT TCATTCAAAT AAATATGTTC 001200
001201 TGTGGCTTCA TTTTTCAAAC CATGGCTTAT TAGTGTGATA GTAGTTAAGA GATATTCTTA AAATTTGGTA CTACAGTAAA 001280
001281 AATCCAGGCT GCACATTTGT GCTACAGTAT ATTTCTTATA CTAGAGATAA AACTTATGTC TTTAGAAAAG TTTTATCTAA 001360
001361 ATCCTGATAT ATTTGTACTT CCTACTTCTT TCAGTTAAAA ATAATTTTTA GAATTTAGAA ACATAACACA ATAAGTTTCA 001440
001441 CAAATCTAAC CTCACTTTCT TTGTTGGACT TCCAATTATT TCCTGTCTTT AAAAGTTAAA ATGGGAAACA TTTAAAATGA 001520
001521 TTTATCTCTT CTAGATATTT GTGTAAATAA GTTTATACTA AGAAAAAGTG CAAGTAGAAT CTATACTTCA TAGACAAGAA 001600
001601 AATGAAGACA ATATAACTTT AGACAATGAA TTTAACATCT TGAAAATTAA GTATTGACAT TATCTCATAA ATCAGTTTAA 001680
001681 AATTTCACAT TCACCAAGTA AGACAAATAA TTATGGAAAA GAGTCACTGA ATTATCAACA TGTTGATCTA TATGTATGCT 001760
001761 CTAAAAGGTG GTAAGCAAAG AGAGGAATTT ACATTCACAA AAGTCCTGGA CTTTGACCAA GAATCAACTT AAAAATAATT 001840
001841 ATTATGAATT TAATCACATT ATAATCCAAT TGTAATTGTG ACCCTTATTT GCAACTACTT CTTCCTGGAG AAACTTATCA 001920
001921 GCCCCTAAAT GCTTGTGGTC TTATGCCACC CAGACAGTCC TAGGGTTTTC CATTCATGCA TTTTTGAGAG TACAGACTAC 002000
002001 CGTTTCTTGC AAATTTACAC ATTTTGGTTA AATAAAGCAT AAAGAGTAGT AATTCAAGCT TAACCACAGT AACATGTCAC 002080
002081 ATTTGGGGTC AAGTCTGGAT ATATCTAGCA TCTGACCAAC ATCTGTCCTG TGTTATTGAG AGATCAACTG TACTTTCTGA 002160
002161 AGAACAACGT TTTATGGACA GTATGTTAAG GCATTGCGCA AACACTCCAC GTTTTTTTCC CTAATTTAAA CAGTTTACAT 002240
002241 AGTTCTTTTT TTTCTTTTAT TGTAAACGGG TTAAAACATT TATGAAATAC TGCATTAGAA AAGGCTAATA TTCTCCCTAT 002320
002321 TTGTAAAGAA TATTTTTATT TCTAGATAAT AAGTTGTGAT GTATTATTTG TCTCCTCATC AAGTCATCTA AATGTCAAAG 002400
002401 TTTATGGGCA GATGTAGGCC TCTGGCTGCC TGTAAGCCAT TTAAATTTCT CACCTACTTC CACTATTGAG GCTGAAAAGT 002480
002481 GAAAATATTC CATTTCCAGT CTTCCCTGGG CAAGACATCG TATCAGCCCT GAATTTAAAG TCTATATTTT TGAAAAATGG 002560
002561 AATTTTAAAA GATTGTGGAG ATGTCCTAGA TTATGTGCTA TGGAAAAAAA AGAGAATATG ATGTTTTTAA TTCTCAAGAT 002640
002641 TAAAGCAATC AAGAAAAAGT TGTATTTTTT AGATAAAAAA TATAACAAAA ATTTTTACTA TAAAGCCACT TTTATCTGTT 002720
002721 TTTAAAATCT AATTCAGTTT TAGTTTGAAA CTGTTGTTCA AAGGTAACAC CTGTGATAAG AGACACAAGC TGTTTCAGAA 002800
002801 AGTGGCTGCA TCAGAAAGCA AGCTGTTAAG AGTTGCAGGT TGTTAAATTC ACTCTGCAGG GCAGTAGATA AAAAGTGTTG 002880
002881 TTGCACTTCA GCTTTAGTTT ATTTCAGAAG CTTCCTAAGA AATCAGATCT GAGGCTATGG TAGCCTAGGC ACTAAAAACA 002960
002961 ACAACAGCAA CAACAACAAA AAACAAACAA ACAAAAAACA AGAAATCAAA CAAAAAAATA CACAGCAAAA CCTCAGGGAA 003040
003041 ATCTCCACCT GGGGGAAGTT TACTTTGTTG GCTTTTTATG CAGAGGGCCA CTGAGTGATC CTAATCTGTT CTGTCATTTT 003120
003121 CTACCAATTG GGAAGAAAGG GTATGGGAGT TGAGAACTGG AAATACTAAT GAAGAAGAAT TTCTGATGTT TAGCAGAAGT 003200
003201 ATGTGATATC TCTTGCATCT TGGGGCTTCT TTGAAGCCTG GTATTGCTGG CTTATATACC TGGACCTGTC AGAGTTTGAT 003280
003281 TTTCTCACAC AGCTAAAATG TACAAAGTAT AAGCTCATTA AAACAACATA ATGGCTTAAT GAAAATTTGC TGAGGTTTAT 003360
003361 TAAAATAAAT TGCTAACCAA GGCAATGAT
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Predicted Small Protein

Name NONHSAT092544_smProtein_197:448
Length 84
Molecular weight 9299.9871
Aromaticity 0.10843373494
Instability index 67.9096385542
Isoelectric point 9.26690673828
Runs 13
Runs residual 0.0165997322624
Runs probability 0.0654885654886
Amino acid sequence MHKTKINRIIILKKCILELFLSVPGTLSILGYYPLRQGDMGGKRGKQENSPLDCLYFGFW
ISCSIPLLSFTFQSSQVAASCIL
Secondary structure LLLLLLLEEEEHHHHHHHHHHLLLLEEEEEEELLLLLLLLLLLLLLLLLLLLLEEEEEEE
EEELLLLLEEEEELHHHHHEEEL
PRMN LLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLHHHH
HHHHHHHHHHHHHHLLLLLLLLL
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