ENST00000420071.1
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000420071.1 |
Source |
Gencode19 |
Same with |
lnc-AL645730.2-1:1 |
Classification |
intronic(AS) |
Length |
566 nt |
Genomic location |
chr1+:49723083..49734957 |
Exon number |
4 |
Exons |
49723083..49723149,49731815..49731918,49733754..49733931,49734741..49734957 |
Genome context |
|
Sequence |
000001 AGTTTGCTCT CAGACTGCTG TGCTAGCAAT CAGCGAGACT CCGTGAGCAT AGGACTCTCC TAGCCAGATA CTGCAGTCTG 000080
000081 ACAGAGATGG TAAAAAAAAA ATGGCTTGCA GATTGCACAT TAGAAGATTC CTCTCCCTCA CTGAAAACTT GTGAGAAGGC 000160 000161 AGCCAAAAGA GGTTCTCCTT CCTGCGTGAT GGGAAAGTCA AGGATAATAA ATAGAAAACC AGCCGAGTGG ATGGCTTCAA 000240 000241 TACTAGGCCA ACCTATAATG CACCCCATGA ATGAATTTCC ACCTATACTC ACTTCATGTT TCCCCTGCAC AGAAGTGCTA 000320 000321 CGGAGTTAAT AGGACAGATG AAATAACAGC ATTTGATCAA ATCTAGGGTA GGGTGACAGT GGATGAGACT ACATTGACTA 000400 000401 AAGCCCAATG ATTCCAACTG AATCCATCTT AGACCAACAT ATAGACGGTT GACTTCCAAA TATATGAGAG CACCCAGACA 000480 000481 AGATCAGCAG ATTAATCTAC AGTTGATCAC TAATACAGAA AAACCATCCG GTTGGCCCAT GGACTTAACG AGCATTAATA 000560 000561 AATGTT |
Predicted Small Protein
Name | ENST00000420071.1_smProtein_86:328 |
Length | 81 |
Molecular weight | 8909.5198 |
Aromaticity | 0.05 |
Instability index | 85.43125 |
Isoelectric point | 9.16741943359 |
Runs | 11 |
Runs residual | 0.00131578947368 |
Runs probability | 0.0416325416325 |
Amino acid sequence | MVKKKWLADCTLEDSSPSLKTCEKAAKRGSPSCVMGKSRIINRKPAEWMASILGQPIMHP MNEFPPILTSCFPCTEVLRS |
Secondary structure | LLLLLLLLLLLLLLLLLLHHHHHHHHHLLLLLEEELLLEEELLLHHHHHHHHHLLLLLLL LLLLLLLLLLLLLLLLEELL |
PRMN | - |
PiMo | - |