NONHSAT001947
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT001947 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1325 nt |
Genomic location |
chr1-:28572187..28573511 |
Exon number |
1 |
Exons |
28572187..28573511 |
Genome context |
|
Sequence |
000001 ttgcagtgag ccgagaacgc gccactacac tccagcctgg acgacgagag tgatactccg tctcagtcaa tcaatcaatc 000080
000081 aatcaatcGT TTGATTTTCG TTTTATGCTT TTACTTCCAA ATTTATATTT ATTGCAAAAA ATGTGGAATA TAACAAAGTG 000160 000161 TAAAGGTGAA ACTGAAATAA CCCGAAATTA TATTTCCCCC TCTGTGGTTT TTTTTTTTCC GTCTCTGTGT TTTTCAATGT 000240 000241 TTTTCAGGCC TTCTGTCTTG AGCTCGTATT ACTgctgttc actgatgtat tgtaaaagcg taaaaccgga cgtgacccaa 000320 000321 atgtctatca aaggagactg atgagagaaa taaacggatt tgttcacaca acggcttcta cagcaaagaa acagaaggta 000400 000401 gctccaagtg ctctgaaatg gaaaggtatg caggatttcc tgttaggtta aaacagaacg aagcaaaaAC CGAGGTTGCG 000480 000481 CAATGATACA TATAGAACAG TCTCATAGTT GTATACATAG TTACACAGAG GAAACAAAGA TCTGGAAAGA TGTGTAGTTT 000560 000561 GCACCTGTTA CCATTGGTTA GCTCTGGGGT GGACGGAGAA GGGAGAAGTT TTAAGATTCT TTATATAATA CACTTATTTA 000640 000641 ATATCTATCT ATGTGCTAAG TTGTATTACA TTTGTTGTTT TTTAAAGAGA TCCTTTTAAA CAGAGAAGGG AGAACTCCCT 000720 000721 CAAATCCCAA TTGCACTACA AAGAGAAACC AACATGTTGG TTATTTTTAT AGCATATAAG TTTATATACC GTATTAATAa 000800 000801 tgtatagcta tatagcctgc tttttccact tagcacattt cataattttt gtaatattaa atattcctta aatataattg 000880 000881 ttaatggttg cagactattc atgtatgcta taatttatta atccttattg agaacattta gggttttctt cccaattttt 000960 000961 cacatatttc aagatgagat aaaactctta aataattata ttcctgatta attaaattcc tagaaaaatt cgtgagttga 001040 001041 agactatgaa caAATAAATT TAAGGCtttt ttttttttaa gagagggagt attgctgtgt tgcccaggtt ggtctcaaac 001120 001121 tcctgggctc acatgatcct cctgcttcag cctctggggt agctgggact acaggccact gcaccAGACT TTAACACTCT 001200 001201 TGggccaggc acggtggctc atgcctgtaa tcccagcact ttgggaggct gaggtgggcg gatcacctga ggtcaggagt 001280 001281 ttgaaaccag cctgaccaac atggggaaac cccgtctcta ctaaa |
Predicted Small Protein
Name | NONHSAT001947_smProtein_104:340 |
Length | 79 |
Molecular weight | 9084.7737 |
Aromaticity | 0.153846153846 |
Instability index | 56.5461538462 |
Isoelectric point | 8.89739990234 |
Runs | 15 |
Runs residual | 0.0586303939962 |
Runs probability | 0.0525289995879 |
Amino acid sequence | MLLLPNLYLLQKMWNITKCKGETEITRNYISPSVVFFFPSLCFSMFFRPSVLSSYYCCSL MYCKSVKPDVTQMSIKGD |
Secondary structure | LLLLHHHHHHHHHHHHHLLLLLEEEEELEELLEEEEEELLLLEEEEEELLLLLEEEEEEE EEEEELLLLLEEEEEELL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHLLLLL LLLLLLLLLLLLLLLLLL |
PiMo | oooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTTTTiiiii iiiiiiiiiiiiiiiiii |