NONHSAT004118
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT004118 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1569 nt |
Genomic location |
chr1+:81001439..81119893 |
Exon number |
6 |
Exons |
81001439..81001627,81006273..81006321,81106968..81107086,81109639..81110052,81112245..81112908,81119760..81119893 |
Genome context |
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Sequence |
000001 CTGAGTGTTA GTTTTAAATA GACTATTGAC AAATTACAGA TTTTTTTCAC GTATTGAAAT TATATTCCAG ATGATTTTGA 000080
000081 GATTTACTGG TATAATATTC TCCTCATGAG GTAGGATGGA AGGGAAGAAA TAGAGAAAAA ATGTTCTGCT CTGAAATAAA 000160 000161 TGTGGTGTTT CCTGACAGCG TTTGTCAAGG AAGGAAAGGT CGAAAATAAA GCACTGATGG AAATACATGA TAAATAAGTA 000240 000241 TTGCCGGAGA GTTTCTGCAA TATGCTACTG CAGTCCATAT GCTTATCAAT TATGAGGATT TTTGGCTTTC GGCTCTGGAA 000320 000321 AATATGAGAA ATATGGGCAA TTACTCTCTG AAGAAAGTTG GTATTCTGGA GCCAATGCAC ATTTAATAAT GAATGTTTTT 000400 000401 TCTTTTATTT CTTTTCTTTC TCTCTTTCTC TCTCtttttt tttttttttt tttttttttt gacaaggtct gactctattg 000480 000481 cccaggctga agtgcagcgg caccatctca gctcactgca acctccacct cctcagctca cgtcattttc ccacctcagt 000560 000561 ctccacagta gctggaacta caggcataca ccacgtgtgt taggctaatt tttgtatttt ttttgtagag atggggttcc 000640 000641 accatgtagc cccggctggt cttgagctca tgagctcaag cgattcacct gcctcagcct cccaaagtgc tgggattaca 000720 000721 agtgtgagcc accATTCCTG CCTCTATACC TCTAAAGGTA TTAGTTTTCC CTAGGTGTTG AATAATTTGA ATGGGAATTT 000800 000801 GAAGGTCCAT GGCTTCCAAA CCAGCAGGAG TTAAGGCTTA ATTGCTTGGA AATACATTTT CATGGCTGAT ACCAGTAACA 000880 000881 GAAAAATGTC TGTATGTCAA GAGGCTCTGT ACTAATCAGT TAACCATAAC ATGTGCCACC CCATACCTTG GGCCAATGTA 000960 000961 ACTGTTAACA GCTTGAAGCT ATTAAAAATG TACCAATGGA GAACTTTCTT ATACTTTTTT CACTAATGTG CTTCTTCACT 001040 001041 CTAAATAAAG GAATAGATAA ATTTTATACT TAACTACTGT CAGAGAAAAG GAAAGTACCT TCGCTTAGTT TGAGCTTCAA 001120 001121 AACATTACAT CCAATGGTGT TCATTAAGGT AACACTTTGA AAGTCACTCA ATTGCTAATA TGCTCTCTCT GCGTCAACTC 001200 001201 AGAGGCTGCC TATTAGATCT AGTTACACTC CAGAGACAGG GATTTGCTTT CCAGCTCTAG AGATCAGGTC AAGAATTGCA 001280 001281 ATAACAATTA GTAATTAGTA GTTAGATCTC AATTTACCAC ATTAGAAGGT CACTCCTCTG AAGCATTTGG TCTCATGAGA 001360 001361 GGAAAGGAAT ACAGGAGACC ATCAACTGTT GACACTTTGA AATCAAGAAA AGAATCTAAG ATTCTCCTTG AAATTgagtg 001440 001441 agccaccgtg cccaaccTCT ACTGGCCATC TTCTTAACAC AGTTATCTTC TACTATCCTC CACCTACCTC CTCGTCAACA 001520 001521 TCTGATTCTC CTAACTTTCA AGTATATCTT GCACGTGTGC CTTTCTCCA |
Predicted Small Protein
Name | NONHSAT004118_smProtein_392:607 |
Length | 72 |
Molecular weight | 8502.7174 |
Aromaticity | 0.239436619718 |
Instability index | 44.9985915493 |
Isoelectric point | 10.666809082 |
Runs | 7 |
Runs residual | 0.0499629355078 |
Runs probability | 0.0125545713781 |
Amino acid sequence | MFFLLFLFFLSFSLFFFFFFFFLTRSDSIAQAEVQRHHLSSLQPPPPQLTSFSHLSLHSS WNYRHTPRVLG |
Secondary structure | LHHHHHHHHHHHHHHHHHHHHHHLLLHHHHHHHHHHHHHHHLLLLLLLLLLLLLLEELLL LLLLLLLLLLL |
PRMN | LHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL LLLLLLLLLLL |
PiMo | i??????????????????????????????????????????????????????????? ??????????? |