NONHSAT004550
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT004550 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
4451 nt |
Genomic location |
chr1+:94312708..94317158 |
Exon number |
1 |
Exons |
94312708..94317158 |
Genome context |
|
Sequence |
000001 ACGGTGCAAC GGCTGGCCTG GGCCTGCAAC TCTGGGGTCC CGGCCGGGCT GGAGCGGCCG CCGGAGAGAC CTGGTAGGCG 000080
000081 GGGCGCTTGG GGCAGGAAGG GAGCCGGGGA GGGAAAAGCG CGACTGTGAT TCGTACGGCT GGGCCCGGAC CGTGAAGGGG 000160 000161 ACCGGGTTGC GGCTGCCCTC ACACCGACCA GGTGGGACCG TCGGACTGCG GCCGCCCTTG GCTCAACTGG GTCGCCGACC 000240 000241 TTGTTGAGGG GCGACCACTG CGGGGAGACC GAGAGCCTGC GGCTGGCGTT TGAGGCGGAT GGCAGTGCCC TGAGCGCGGC 000320 000321 GGCTGGGTCT CGGTGACACT GACGACGGGA GGCGCGGTCG GAAGAGCGCG GGGCCGTCGC CTCTGGCTTA ACATAGCAGA 000400 000401 TGCGCTGAGA CTCCAACAGG Tggctccgtg gcgcaatgga tagcgcattg gacttctaga ggctgaaggc attcaaaggt 000480 000481 tccgggttcg agtcccggcg gagtcgTAAC GCTTTTTTCC CTCCCCCCTA CAATTTATTT TCTGCCTCCA TCATGTCTCT 000560 000561 TATTTTTTTT TTTTGCTAAA CGGTTTAACT TCTCTCTCAT TCCCTGCTCT CGCAGTTCAC TGCATTCGGT TCTTGCGGTC 000640 000641 CTTTCTTAAG CGGCTCGCAG GGTCCCGAGC CCCTCAGCTC CCCGGGCCTC GGTGGCCCAG GGCCCAGCTC AGCCGACTGG 000720 000721 GCAGTCGATG TAGGTCCTGA GAAGAgcggc ggcggcggcg gcggcggcgg cgAAGGAAAA GCGACACTGA AGCGAAGGCT 000800 000801 CGCGGTTTCG GCCTAAAGGA AAGTGCAGGG GAGGCCCGGG TCTCGGGTGA CACCCCCACG CCTTGAGCGG GACTGTGGTT 000880 000881 GCGAGGGAGG GACGAGAAAA CACGCCTACG CCCTGCGTGC GCTGTGCTGA CTACCTCTCC AGCATGGAGG CTTCCAGAtg 000960 000961 agcagacacc cgaatcccag cgggagcccg tcaaaaatgg agatttctgc cgtcactctg ggactcttaa ttcggtccgt 001040 001041 ctggggtggg gcccaggaat ctgcatttct gataaggtcA CCCGCTCCCC TCCCCCATTA TTCCAGTGCA AAGAGGTCCT 001120 001121 AGGCCCAGTG CCCATCAGCT CCTCAAGACA GGAATTACTA TATCTTTTTC TGACAACTGT TAACTTTGTA CAAGGTTAGC 001200 001201 AAATAAATCC AGGAATGAAT GGAATCTTAA AACTCGTAAA ACAACAATGA AAGGTAATTC ACACAAAAGA TACAAAATCC 001280 001281 AAAATTGTCA AAAAAGATAC AGGGAAAAGT AAACATCCAT GTTATTCCTA TAGTCCAGCC TTGCAATTCT CTCCACAAGC 001360 001361 CATTAGTGGT AATGGTTTCT TGGAAATATT TTCAGATTTA TTTTATGCCC ATATCAGCAT TTTTAACATC TTTTGTCATA 001440 001441 AATATGTCGT AAATAACAAT GTTATTGATA CATATCCTTT TAAAAACACA ATGGTAGTAT GCTATACTGG CTTGTTTTAC 001520 001521 TTATGAATAT ATGtagagct gcctcgttcc attgtacgta tgtatggtaa tgatttaaca gtccctaata gctggacatt 001600 001601 tagattgcca gtattttcct attacaaaca atgcatcagt gaacatcctt gttcttttat tattgtacac aagtacaggt 001680 001681 acatctatct gtaggataga ttcctagaaa gttgaattgc tggttcaaag gtttgtgcgt tcttaatctg tacatttttt 001760 001761 aatatatatt ggcaaattgc cccatagaga ttgtatccat ttttctctcc ttagcaatgt gtgagagtgc ctgtttcccc 001840 001841 acaactcaca aaaggtggtt tctagctgtg attttaattc gtctcttata ttgatttttt aaaatttgta tttatattat 001920 001921 tattattatt atttgagaca gggtcttgtt ctgttgccca gactggagtg cagtggcact atcacagctc attgcaccct 002000 002001 caacgtcctg ggctcaagca gtgcttccac ctcagcctcc caaatagttg gaagtacagg cacatgccaa cacacccggc 002080 002081 taattttaaa attttttgta gagatggggg tcactctatg ttgtctaggc tggtcttgaa ctcctggact caagaaatcc 002160 002161 tcccatcttg gcctccctaa gtgctgggat gacagacagg agctactacg cctggactgt gtcttttatt atgaatcaag 002240 002241 atgagtacct ttccatacag agaataattt gtaatttttt tcctgtgatt tatctgttct tgagttgtgt tcatttttct 002320 002321 gtGGTATGAT GGAAAACAGC CCTTTGTGAT ATATGTTACA CTTATTCTTT TTCAGTCTTT TTGTCGTTTG ACTTTGTTTA 002400 002401 TGGTATTTTG TTTTGTTTTT CTGTCTTACA GAAATTCATG ATTCATGTAT TTGGATTTAT CAGTCTTTTA TGGCTTCTAG 002480 002481 GTTTGGGGCC ATAATACACT CAGATTATTA AGTTATTTCT TTAATGGCTT TATTTTTATG GTTTTGTTTA TCTTTGCTTC 002560 002561 ATCTGGAATG TGTTTTTGTA TAAGGAGTGA AGTGGAAGTT TTGTCCCAAA ATCACTTTTA ATGAACACTC CTTCTTTTCT 002640 002641 ACACGATGTC ATTTGAAATG CCACATTTAT AAtttttttt tttgagacag agtcttgctc tgttgcccag gctggagtgc 002720 002721 agcggcacaa atctcagttc actgcaacct ccacctccca ggttcaagca attctcttgc ctcagcctcc tgagtagctg 002800 002801 ggattacagg tgcatgccac tacgcccggc taatttttgt atttttagta gagacggggt ttcgctatgt tggccaggct 002880 002881 ggtctggaac tcctgagctc aggcgatcca tctgcctctg cctcctaaag tgctgggatt acaggcaaga gccaccacat 002960 002961 ccggccCACA TTTATAATTT TCTAAATTCC CACATGCATA TGGGTTTCTG GATTCTCTGC TGCATATGGG tttctggatt 003040 003041 ctctgctcta ttccactgac ttttctgtta attttgattc accagaactg tgctgttttA CCATTTAGTA GGGTCAGTCC 003120 003121 Ttgtagggtc cagccccaca gggtcagtgg gttttcgccc catgtgtgga gacgagagat tgtagaaata aagacacaag 003200 003201 acaaagagat aaaagacagc tgggcctgcg ggaccactac caccaagatg cggagaccag tagtggcccg aaatgccagg 003280 003281 ctgcgctgat atttattgga tacaagacaa agggacaggg taaggagtgt gagccatctc caatgatagg taaggtcaca 003360 003361 tgggtcacgt gtccactgga cagggggccc ttccctgcct ggaagccgag gcagagagag agggagagag gagacagctt 003440 003441 gtgccattat ttctgcatat cagagacttt tagtactctc agtaatttgc tactgctatc taaaaggcag agtcaggtgt 003520 003521 acaggatgga acatgaaagc agactaggag cgtgaccagt gaagcacagc atcacaggga gatggttagg cctagtcagg 003600 003601 ccctccacaa gaggtaaagg agtagagttg tctctaaact cccctgggga aagggagact ccctttccca gtctgctaag 003680 003681 tagcaggtgt ttttcctgga cagcgacgct accgctagac catggtctgc ttggcaacgg gcgtcttccg agacgctggt 003760 003761 gttaccgcta gaccaaggag ccctctggtg gccctgtctg ggcataacag aaggcttgca ctcttgtctt ctggtcactt 003840 003841 ctcactatgt cccctcagct cctatctctg tatggcctgg tttttcctag gttatgatta tagagtaagg attattataa 003920 003921 tattggaata aagactaatt gctacaaact aatgattaat gatattcata tataatatct atgatctata gtataactat 004000 004001 tcttatttta tatattttat tatactggaa cagctcatgc cctcggtctc ttgcctcagc acctaggtgg cttgccaccc 004080 004081 acaAGTCCTC TCTTGTTACT CTTTTGTTTT TTTAAACATT TTTCTACTCA TTCTTGAATT ATTATTTTTC CTCAGTGaat 004160 004161 aataatagca cttatttggc atttgttata tgacaggtac tattctcagt gctctatgta tcttcattta atcctcctga 004240 004241 cagccctacc aggcagatac tattatcccc tttcatggaa gaggcatctg agacagagag gttaagtaac ttgtgcaagg 004320 004321 atacacagct aataagcaac aagcctggat gagaacccag aaaggctggg tctaTGGGTA AAACCACAAT TCCTTATCAT 004400 004401 CTTTTCACAT GAGCTTTAGC TACAGCTAGT CTGGCTCTAA TTTTAGGAGG T |
Predicted Small Protein
Name | NONHSAT004550_smProtein_2813:3058 |
Length | 82 |
Molecular weight | 9499.0894 |
Aromaticity | 0.16049382716 |
Instability index | 70.3740740741 |
Isoelectric point | 8.23736572266 |
Runs | 10 |
Runs residual | 0.0187229171777 |
Runs probability | 0.0632308779367 |
Amino acid sequence | MPLRPANFCIFSRDGVSLCWPGWSGTPELRRSICLCLLKCWDYRQEPPHPAHIYNFLNSH MHMGFWILCCIWVSGFSALFH |
Secondary structure | LLLLLLLEEEEELLLEEELLLLLLLLHHHHHHHHHHHHHHLLLLLLLLLLHHHHHHHHHH HHHHHHHHEEEELLLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLH HHHHHHHHHHHHHHHHHLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiT TTTTTTTTTTTTTTTTToooo |