NONHSAT008338
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT008338 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1023 nt |
Genomic location |
chr1-:182806324..182808387 |
Exon number |
2 |
Exons |
182806324..182807069,182808111..182808387 |
Genome context |
|
Sequence |
000001 GGCGGGGCTC AGCAACCTCG CGGCGCGGAA GGGTTTCGTT GCTAGGGAGA TGGGCTGAGC CGGGCGGGCA TCGCGCCAGA 000080
000081 CCTGCTACTC TGGATAATCC ACTCTCCTGG ATAATCCACT ACCCTGGATA ATCGGCTGCC CGCTTTTGCG CATGTTAGGG 000160 000161 AGTTGACGGC CTGTAGCATT CTGATGCAGC AAAATATTTC GCAGGGTCTG TCATAGGGAT CTCCGGTGAG AGGAGGTTCC 000240 000241 CTTCGAAGGC AGAACTGGAA ACCTTGCTGC TAacttgGGT GTTGAAAGCA GCAGGGGCCT agaagacatt aaaccgatac 000320 000321 cacagaaata caaaggatca ttagagacta ttatgaacaa ctatatgcca acaaattgga aaccaaatgg aaatggataa 000400 000401 attcctgaac agatacaact taccaaaatt ggaccaagaa gaaatagaaa acctgaaaag accaactatg agtaatgaga 000480 000481 ttaaatcagt aatatagagt ctcccatcaa agaaaagtcc aggccctgat ggcttcactg ctgaattcta ctgaacagtt 000560 000561 aaagaagaac tcataccagt tctcaaactc atcctgtgag ggcagcatta ccctgatacc aaaactagat atggacacaa 000640 000641 gaaaaaaaat ctataggcca gtatccctga tgaacataga tgcaagaatc ctcaacaaga ccaggtgtgg tggttcatgc 000720 000721 ctgtaatccc agcactttgg gaggccaagg caggtggatc acctgaggtc aggaatttga gaccagcctg gccaacatgg 000800 000801 caaaaccctg tctgtactaa aaatacaaaa attagccggg caaggtggcg tgtgcctgta atcctagcta cttgggaggc 000880 000881 tgaggcagga gaattgcttg aacctggagg gaggaggggc agaagttgca gcgagctcag atcgtcccac tgcactccag 000960 000961 cctgggtgac agagtgagac tccatctcaa aataagtaaa taaataaaGA GACTCAACTA GCA |
Predicted Small Protein
Name | NONHSAT008338_smProtein_716:976 |
Length | 87 |
Molecular weight | 9604.9132 |
Aromaticity | 0.0697674418605 |
Instability index | 89.9476744186 |
Isoelectric point | 9.49041748047 |
Runs | 9 |
Runs residual | 0.0349704963554 |
Runs probability | 0.0490686765196 |
Amino acid sequence | MPVIPALWEAKAGGSPEVRNLRPAWPTWQNPVCTKNTKISRARWRVPVILATWEAEAGEL LEPGGRRGRSCSELRSSHCTPAWVTE |
Secondary structure | LLLLHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLEEEEEEEELEEEELHHHHHHHH HLLLLLLLLLLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |