NONHSAT008569
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT008569 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
4644 nt |
Genomic location |
chr1+:193426728..193434850 |
Exon number |
2 |
Exons |
193426728..193427217,193430697..193434850 |
Genome context |
|
Sequence |
000001 GGTTGTTATG CTCAATCACT TTTGTTTTTT TTTCCTCCTA AAGTCCCAAG ACAAAGAATA TCTCTTGATA CTATTAAATA 000080
000081 TAGATGTCTG GACTGAATTG AGCTTACACG ACAATTGCAG TCAAGATTCT GCAACTCAGA ACGGGCAAAC CAGGTAAGCG 000160 000161 GTGCCATTTT TAGAACGTTG TTTTAATAAG GTTTATTCCT GTCTTGGTCG GCTGCATTTT ACATTTGTAA TCGTCAGGCT 000240 000241 GTGAGTGTGA AGAGTTATTG CCATGACGAC CAGGACTGAC TGACTTGCCT TTCAGAAATG GTAACGATTC AGCATGTTTG 000320 000321 TAGATGATAT CTGTGGTTCT CAATGACTTT CTAGAAGGTC ATACGGTTTT GGCAGATGTT CCCagtggtg tggaaagact 000400 000401 actggatgag aaaaaatgtg aactgtgttc tagtcctgcc tctccctgaa ccaggtgtat agcctcagga aaatctccac 000480 000481 ctattggggg TCTAGCACCT AAGCATCAAg ggtggaaagg gagactggaa gtgcaagtct gaaaggagaa aaaagaaggt 000560 000561 gaaaccagtc tgcaggagaa atgactggga atttagaagg agtgggcacc cacaagagaa gagaagacac gaagtgagaa 000640 000641 aaggctgctg cttgccaagg cacttttaag aacgggacat cttatcactt ttcagttgtt tgagcttctT GCTCCCCAGA 000720 000721 CTTTCAGCTA AAATtgtggc tgttttgttg gcggaaatca gtgaaaagaa aatgagttct gtgtctagtt cagtttacag 000800 000801 cagaggcaag acgatgcctg aagcaggtgg caaggagtga aaggggagtg tgcatggaag cagcaggtca gagccagagt 000880 000881 ttatcatgaa agtctgagcc ctcGCAAACA TGGTTCATGC ACAACCCATA AAATTTCATC AAACTCTCAG TCTCAAAAAT 000960 000961 TTGTGTAGGA AGAGCCTGAC ATGAATGCTG CAAATACATG ATTATTATTC CTAGACATAT CTAAGGGCAT CTAAAATTAT 001040 001041 AAAATTTATA GTGATATTGC TTAAATTACA TTTTTGAATA TCTCACTCAT ACATGTATTA CCTATATTAT TATACTGTTA 001120 001121 ATTATACCTT CATTGATTTT TTTTAAATTT TATTCTTTTG TTTTAAGTTT AGATGTGGAT GCATTTTCTA AAAACTACAA 001200 001201 GATTACCCAA ACAGAACCGA TTGAATTTCA AGGTTAGGAA GTTTTTCTAA TAATAATTTA TGGTCCAAGT ATAATGTGAT 001280 001281 GAAGTGTGCT TGTAGGTACC AACCTGAGAC TATATTTGGC AAGAGTTGAA TAAAATATGG GGGAAATGAT TTCTAGCCTT 001360 001361 GTTAGAAATG CCCTCAGAAT GCATTGTTAT TTCTAAAGAA TGCTGCATTG TATATATGCA GATATTTTTC AGCCAAATCG 001440 001441 CTGAATTTGT AGAGATTTCA TATCACATAA GATTTGTTTC CAATGCATTT TCTTCTGAAA CTATAAGAAG ACTAGCTTCT 001520 001521 CTCTTAATTT CTAAGAAAAA TGTTATAAAC CTTTATTATG ATGGTACAAT TTATGAAACA ATGTAAATTT TACATTTTCA 001600 001601 CTTTTGAGAG TTATTTTTCC CCAAGCCTCT GCCTTTTTTG AGTATTTGCA AAGCTCTGCA AATGACAGGC GCATCCACAA 001680 001681 TGCAAAGAAT AATCTTCCTT TGGGGCTGTT CCTGGGGTAG TGATTAGTAG CGTCTTCACT GAATATTTAA CTTCCTCAAA 001760 001761 ACTGCTTATC TGTGCTGTGG ATCAGTGCAA GATCTGGGTG AGCTGTTGCT ACTTTACATA ATTAAGTTTC TCTTGCCAAA 001840 001841 AAAAGAGAAA GTAACAAAAT ATGAAGCAAA AGAAGCCGAA AGTTGGACTT TTAAAACATT CTCCCTTCAT GTTATTTTCT 001920 001921 CATTGAAAAT AACCTGAAAC AAAAGCAAAA TATTTGAGAT TTAGGAGGGA GTTTATGCAG ATCAGTCAGG TTGACAGCTC 002000 002001 ACATTTTCTT GCAAAACTCT TAGGAATTTT CCTCCGCAAA TCCCTCCGCA GTCAGTGATA AGTACTAAAT GCCACAAAGA 002080 002081 AAACAATTTC CCATTGTTCA AAAACTGACT GGTGAAGTAT TGTGGGTGAG GCAAAAAAGA GGGTAGGGAG AGAAATTCTA 002160 002161 TTGTAGGGAA ACTAATGCCA GACAGAGCTA TTAACTCAAA TGTACTGAAA TGATAGATAA TTCAAGCTTC TCATGTCACT 002240 002241 TTAAATTAGT AAAAAATCAC TGCACAGGAT TTGTGCTTAA TCCCATTTTT TATATGTAGA AAATAGGCCC CAGAATTAGG 002320 002321 TTGACGTGTA CTTTTAATGT GTAGATAGGA CATCTACTCA CTTTCTAGGC ATGTGTGGAT GAAAAAGACT TTGCTTGCTT 002400 002401 AGTTGCACGT CATTCTTAGT TCCTTCTCTT TTGAGTGTGC TAGCGTACCC AATGGAATCC CCTCCCCTGT ATTTATTGAA 002480 002481 CGCTATAATG TATGGGGGTG TCTTTTCCTG GTTAGTGTAA TAGGAAAAAT TGCATTTGCT TATCTATTGC AAATGAAAAT 002560 002561 CATCTGGGGA ATATAAAAAG CATTTTCAAT TCTGCTACCA TTATTTCAGA AGCAATCAAA TGCAGAGGAA TGAAAGTCAA 002640 002641 ACACGGAGAA AAATGCTGAT GGATTGGGCA ATGTGCATGG CTCTCTGGGA CCATCATTAT TTCAGTATTC AAGAGGAAAA 002720 002721 TGCACATTTG AAAGATGGTA AATTCCATCA CATACAATCA ATCATTCATC TCCTCTAGCA ACAATAATTG TGGAGGAGAT 002800 002801 AGTGTTCAGA CATTAACTAG GTAGTCATCC CTGCTTGTTT GTTAGTTTGT TTCAAGGCAT ACTAAATCTT ATGCAACGTT 002880 002881 ATGTGGACAT CTCAGATGAT TTTCAGATAT TGGTACTTAG TACCAATCAC CTGCAAATAA TGAGGTCAAA GTAAACACTG 002960 002961 CAACCTCAAA GGGCAAGATG CTTAGCATTG TCTTTCATCT AAAACATTTT GTCCTTTCAT TCCAGATTTT AAAAATAGGT 003040 003041 TATCTGCCTG CATTTTATGC ATTTTTCTAT CTTTATAATC TGAAGGTGAT TTTATTAATA CAGTAAATCT TGGTCAAGTG 003120 003121 ATACTTTAGG AAGATGCTTT TTCTGGGTAA ACTAAAAGCC TGACGTGGCT CTTCCTGATG TTCTTAAATA TTTTATTAGC 003200 003201 AATGTCTCTC CTCACCCCTT GCCTATTCAT AGTCTCTTTC AGTTTAATGA TATAAAGCAG GTGGTAGGGT TGTCAAAACT 003280 003281 GGGTTTCCAT TAGAAACAAT CTCTGGGAAT GTGGTGTATT TTCTCCCTTA TTTTTCTCAT TATTAGATAT CTCAGGCTCA 003360 003361 AAGGCCCATA TGGCAGTTTG GAGAAAGATA TGTCCTGTTC AAAACCAATG TTCTGAGAGT TTGAGAGCCG TGAAATCAGA 003440 003441 TATCATAGTT TTTACACTTT TTCAAAGCTT TCAATTGTGA ATTCTGGATT TCTCTTTTTC TTTCGAACTC TGAAAAAAGC 003520 003521 CCAATCTCTA ACAGCACCTC CCCTCCCACC CCCTTCTGGT ACTGGCTGTA GCAGTACTTA GGAAGGGAAG AGTGTCTTAC 003600 003601 AGGAGGTGGA GACACATTTA TACACCAGTC TTCATGCTTG GGAAAAAGCG ATTTAGTCAC TGTTAACTTC TTTAATTATT 003680 003681 GATGGTTCAG AAAATGTTAT CTTTCTTATC TTTTATTTGT AACACTTTTC CCTAAATAAA AGTGAGGCTG GATATTCAAA 003760 003761 TTATTATTTA GTGCAAGAAA CTAAAAATAG CTTTCCCTCT TTTTAGATTT TTTTTGACAA CAGAGATGAT ACATTATATG 003840 003841 TGTATATTTT ACCTTAATAA AAAGACTTAA AAAAAAAGAA AATTAAAGAG AAAAATAGAA AGAAAGGTAG GAAAGGCATA 003920 003921 GAAGGGGATA TGACACTTTA GAATCTCCTA GCTTAGAATG TGACAGAAGG AGAGTGTTAG TAAAACTGAG GAggctgggt 004000 004001 gcggtagctc acgcctgtaa tcctagcaat ttgggaggac gaggtgggct gatcacttga ggtgaggagt ttaagaccag 004080 004081 cctggctaac atggtgaaac cccatctcta ctaaaaatac aaaaaattag ctgggcatgg tggcaggccc ctgtaatccc 004160 004161 agctactcgg gaggctgaga caagagaatc actggaatcc gggaggtgga ggttgcagtg agctgagatc gacccattgc 004240 004241 attccagcct gggcaacaag agtgaaactc catctcagaa aaaaaaaaaa aaaaaaaaaa aaaaaaGAGG GCCATTCCCT 004320 004321 GCTTTATTTG ACATAATCTA AAAGCTCCTA TCATTTCCTC Cttttaaaac cttttattga aatacaatat acacacagaa 004400 004401 atgggcacat atcataagta catagctgga tgcattttca caagctcaca caccaggtaa tcaatacccc agaccaaaac 004480 004481 aaacaaacaa acaaacaaac aaacaagaag caggcctaac agcatccaga agccctcctc gtgtttcctt ccagttacta 004560 004561 cccctctctc ccaagggtga ctgctatccc aacttccagc agcatagcct gttttttgtc atttggcata tataaatgaa 004640 004641 aaat |
Predicted Small Protein
Name | NONHSAT008569_smProtein_1367:1585 |
Length | 73 |
Molecular weight | 8398.7445 |
Aromaticity | 0.138888888889 |
Instability index | 64.4180555556 |
Isoelectric point | 5.66766357422 |
Runs | 13 |
Runs residual | 0.0396390916464 |
Runs probability | 0.0496718437895 |
Amino acid sequence | MPSECIVISKECCIVYMQIFFSQIAEFVEISYHIRFVSNAFSSETIRRLASLLISKKNVI NLYYDGTIYETM |
Secondary structure | LLLEEEEEELLLEEEEHHHHHHHHHHHHEEEEEEEEELLLLLHHHHHHHHHHHHLLLLEE EEEELLEEEEEL |
PRMN | LLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHHHHHHHLLL LLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTooooTTTTTTTTTTTTTTTTTTiii iiiiiiiiiiii |