NONHSAT009928
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT009928 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3052 nt |
Genomic location |
chr1+:227751236..227847594 |
Exon number |
3 |
Exons |
227751236..227751425,227770215..227770300,227844819..227847594 |
Genome context |
|
Sequence |
000001 GTTTCCGGGA TCTGGCGGGG CCTTTGTCTT GTGCTCCAGC TGGAGCTTTG GTCCCGTATT CTCGGCTATT TATCCCCAGC 000080
000081 TGCGGGAGGC CCTGGTGACT CTGCTGCTGC AGTGTCTGGT TTCCCTGTGA CCTGCAGGTA CTGGGAGTTA CATAGCTAAG 000160 000161 ATGCCAGGAC ACCCCGAAAG CCGGAAAACG agacgcattc tcactatgtt gcccaggctg gtcttgaact ccttccctca 000240 000241 agtgattctt ctgcctaatc ctcccaaagt tcttagatta ctcatgaatg gattggtgtt cttaccactg cagttagtgt 000320 000321 gttctctgtt agttcatgtg aaagctggtt gttaaaaaca aaaacaaaca aacaaaaaac tgatattcct cttgctttgt 000400 000401 cttttgccat gatacccctt tgccttttat tatgcataaa agcttcctga ggcctcatca gaagttaagc agatgttgat 000480 000481 gtcatgcttg tatagccaac agaactgagg ctaataaacc tcttttctgt attaatttgc cagtgttaag tattcccttc 000560 000561 tagcagcaca aaatggacta acaTCCCATA GGTTATATTT TTATTTTTTT CTTTTGTAAA TACTGGACAA TGATACTCTT 000640 000641 ATATAATCTT CAGTATAACC ATTATAATTG CCCACTATAA AGGAGTATAA TGAAAGGCCA TGTATTTTGA ATCACGAATG 000720 000721 ACTATTTACA AAATGTCATA CTACGTTTTT CTTTGAGCCT GTGACCCCTC TGGCCTGTAA AAACACATAC ATACATTTAG 000800 000801 TTTTGATTAA CATGGAGTTA ATTTTATAAG TCTGTCACTC TAAACATAAG TGTTAGCTTT AAGAGAATTA CAGAGCATGT 000880 000881 AATTGTGTTT GAGTGTAGGT GTGTACTTTT TTGAGAAGAA AACAAAAATA TTGGAACAAA ATATAATTTA AAAAGTATTG 000960 000961 GTAATTTACT AGCAAACTAG GAATCTCAAA GATTCTGAAA GTAAATATTT ATTCTCTGCT TTGTATTGAA TTTACTTCTG 001040 001041 TAAAATCTTA TGGCTGCTGG CTCAGAATCT TCTCATGCAA ATCCTGTTTT TTTCTTGTCT GTTGATCATA CTAAACCTAA 001120 001121 TGTATAGTTT TCTCATTCCA AAGTTCATGA AATTTTCTCT ATATTCCTGA GAAATTCTAA GAATAACTTT CATAAAATGT 001200 001201 ATTGATGTTC ACAAGATAAT TTTAAGATGT AATTCTACAA TATGTGTGTT ACTACatttt atttaattag tatattttat 001280 001281 ttttGTATTT CAATTGGAGA ACCCTATTTT GGCCAATTTT TACTTGGTTT TTGTTTCCAT TTTAATATTT TACATAATTG 001360 001361 AATTTTTTTC ACTTTATTGA GCCATTTTGT TTAGATGTAC ACTGGGAAGG CTTCATAATT CACAAAGTTG TTTTGACATA 001440 001441 TAAATGAGGT GAACAAACAC AGGAAAGTGC TAGGTTTCCT GGGGGTATAA TAGATGCTCT ATAATTAGCA GTAAATATTC 001520 001521 TTGTTTAAGT CACTTTTTGG CTACAAGTAA GAGATTAGAA ATATTCAGCA TAAAGAGATG GCATTAACTC TGCATGTAAA 001600 001601 GAAAACACAT GTATACCCAG GCTGTACAAC TGCCTCTGAA ATTAAGAGGA ATTGTGTTTA TTTCATAGTT ATCTCTGGTA 001680 001681 CTTCACTGTT ATTTTATTTT CACCCCCAAC TATGCGTCAA TCATAGCCCT TTCCCTTCTT TGCTTATTAT GGCTACAGAT 001760 001761 TTCTCACTGT TCTCTGCAGC CCATGTAATT TCATACAGTA TTTTGTAGGT TGTGATAAGG AATTTGAAAT TTTTAATATA 001840 001841 GTGAAAAATT GGATTTAACT GGAGAGTTTG AGGACATTTT TAAGTTAGAA ATGCACCATT TGAATCATTT AATTGGCATA 001920 001921 ATTGGGATGT ACTCTACACA GTTTATAGGA TTAAATTACT GAGTTAGTAA TGTTTGTATG AAAGAAATGT TATTAGATTC 002000 002001 TACCACAAAA TATAGTAAAC ATGAAATCAG TTAGAATAGG TAAAGCATTA ATAATGGTAG GCTATATATC ATAATCACTA 002080 002081 TATAAAGAAA CATCAGAATT TGGAAACCCC TTAAGCAAAA ATATATCTTA GAAATCTTAA GGACACTTAA TGGCAAGCAA 002160 002161 AAAAGTTTAA ATTTAGTTTT TTATAAATTA CATATAGCAC AATTTATGTG TACATGTAGA ATCTTTTAGT TTTTAGTGTT 002240 002241 TATGTAATAT ATTAGACAAT AATAAACatt tacatttatg tttacattta tatttaattt ttcaaattta atttaaattt 002320 002321 CTAAATGCTT CTGTGGATTT AAATTTTGGA ATAATCTTTT CTTCCCCATT GATACTGGAA TCTTGGGAAG TTTCTTACTC 002400 002401 ATATCACAAT ATGTTTTATT TAAATGGATG CAGCTTACAT TGCAGAGTTT ATATAAATAA TCACATAACA AGCCAATTCC 002480 002481 TTAGTCATTT TCTGTATTAA AAAACTCAGA GATCTAGAGA GCTTTTGGAT TGAAATATTT CCTTGGTGAT TTTGGATGCA 002560 002561 AACCTGATTT CTGTGTTCAC ACCATGGCCA GAGATGGGAC TGTTAGCACC ACCTGCTTCT TTAATGTCGT CCATATGATC 002640 002641 AGCATCAGCA CCAGAAACTC CAGGTGTCCC AAACTTAAAG TGAAAGCCAT AGAGTCCTTT GGTGACTCCC ATGTTCTGTG 002720 002721 CTGGTTCTAG AACATGCTGG TAAATATCAG AGTTTCTATG CTTATGGCTG ATAAGTAGAC ATTTTTAAAA ATCATAAAAA 002800 002801 CTGTATTTTC TATATAGTTC AGCTAAGTTT ATGAAAAAGA TGCAGACTCA GTATTTGGAG CATTGCTATC GCTCCATGAT 002880 002881 GTGTTTAAAA ATTAttttta aattgacaaa attttatatc tacatatata tatatcttgt aacacatgat gtttgaaatg 002960 002961 cttaattcta gccaattaaa aatgctttac ctcaatagtt atttttattg tgagaaaggt caacatggtc ttggcactta 003040 003041 aaaaaaaaaa aa |
Predicted Small Protein
Name | NONHSAT009928_smProtein_1577:1807 |
Length | 77 |
Molecular weight | 8492.9285 |
Aromaticity | 0.131578947368 |
Instability index | 42.1869736842 |
Isoelectric point | 8.55767822266 |
Runs | 17 |
Runs residual | 0.0822746521476 |
Runs probability | 0.0553477352785 |
Amino acid sequence | MALTLHVKKTHVYPGCTTASEIKRNCVYFIVISGTSLLFYFHPQLCVNHSPFPSLLIMAT DFSLFSAAHVISYSIL |
Secondary structure | LEEEEEEELLLLLLLLLLHHHHHLLLEEEEEEELLEEEEEELLLEEELLLLLLHHHEEEL LLLHHHHHEEEEEEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLHHHHHHH HHHHHHHHHHHHLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTToooooooooTTTTTTT TTTTTTTTTTTTiiii |